Osprey Custom Network 1.3.1 Downloads
Differences
This shows you the differences between two versions of the page.
| Next revision | Previous revision | ||
|
osprey_custom_network_version_1.3.1 [2010/04/20 09:32] biogridadmin created |
osprey_custom_network_version_1.3.1 [2017/08/08 12:52] (current) |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| - | ====== Osprey Custom Network Version 1.3.1 Formatted Downloads ====== | + | ====== Osprey Custom Network 1.3.1 Downloads ====== |
| - | The Osprey custom file format is a tab delimited text file that allows the user to load in a personal set of interactions data into the **[[http://biodata.mshri.on.ca/osprey|Osprey Network Visualization System]]**. Osprey recognizes both a .txt and a .ocg extension for this file, but BioGRID will use the .txt extension for all downloads of this format. For more details on how to load an Osprey Custom Network, you can [[http://biodata.mshri.on.ca/osprey/OspreyHelp/FileIO.html#sec312|visit the Osprey documentation]]. | + | The Osprey custom file format is a tab delimited text file that allows the user to load in a personal set of interactions data into the **[[http://biodata.mshri.on.ca/osprey|Osprey Network Visualization System]]**. Osprey recognizes both a .txt and a .ocg extension for this file, but BioGRID will use the .txt extension for all downloads of this format. For more details on how to load an Osprey Custom Network, you can **[[http://biodata.mshri.on.ca/osprey/OspreyHelp/FileIO.html#sec312|visit the Osprey documentation]]**. |
| [[downloads|Back to BioGRID Download Formats]] | [[downloads|Back to BioGRID Download Formats]] | ||
| - | |||
| ==== How to Detect an Osprey Custom Network file ==== | ==== How to Detect an Osprey Custom Network file ==== | ||
| - | Osprey Custom Network Files files are denoted by the extension **.osprey.txt** or **.osprey.zip** | + | Osprey Custom Network Files are denoted by the extension **.osprey.txt** or **.osprey.zip** |
| ==== Column Definitions ==== | ==== Column Definitions ==== | ||
| Line 14: | Line 13: | ||
| - ScreenNameA. A common gene name/official symbol for interactor A that will be displayed within Osprey. | - ScreenNameA. A common gene name/official symbol for interactor A that will be displayed within Osprey. | ||
| - ScreenNameB. A common gene name/official symbol for interactor B that will be displayed within Osprey. | - ScreenNameB. A common gene name/official symbol for interactor B that will be displayed within Osprey. | ||
| - | - ExperimentalSysteme. One of the many **[[experimental_systems|Experimental Evidence Codes]]** supported by the BioGRID. | + | - ExperimentalSystem. One of the many **[[experimental_systems|Experimental Evidence Codes]]** supported by the BioGRID. |
| - | BioGRID Interaction ID. A unique identifier for each interaction within the BioGRID database. | + | |
| - | - Entrez Gene ID for Interactor A. The identifier from the Entrez-Gene database that corresponds to Interactor A. | + | |
| - | - Entrez Gene ID for Interactor B. Same structure as column 1. | + | |
| - | - BioGRID ID for Interactor A. The identifier in the BioGRID database that corresponds to Interactor A. These identifiers are best used for creating links to the BioGRID from your own websites or applications. To link to a page within our site, simply append the URL: http://www.thebiogrid.org/ID/ to each ID. For example, http://www.thebiogrid.org/31623/. | + | |
| - Source. First author surname of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) | - Source. First author surname of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) | ||
| - PubmedID. The pubmed ID of the publication in which the interaction has been shown. | - PubmedID. The pubmed ID of the publication in which the interaction has been shown. | ||