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This shows you the differences between two versions of the page.

--- orcs:results [2019/02/19 14:11]
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+++ orcs:results [2019/02/19 14:26]
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 The following are example layouts viewed when using BioGRID ORCS. We've outlined areas of interest with yellow circles, and provided additional details about what it might represent.
-===== Screen Search Results =====
+===== Screen Listing Search Results =====
 {{:orcs:screen_listing.png?800|}}
@@ Line 8: / Line 8: @@
 ==== Layout Legend ====
-  * **A** - Standard annotation data for search results including official name, synonyms, organism name, and description.
+  * **1** - Use this field to perform quick filters of the data shown in the table below. For example, a search for "Melanoma" might return 1 or more rows where melanoma was contained in any field. For more granular searching, refer to **4**.
-  * **B** - Gene Ontology summary for the search result. If you're interested in seeing the full details for this result you can click on each category to expand the GO Summary into a list of mapped GO Entries.
+  * **2** - Use this Download Checked link to download all the screens you've selected in the table below using the provided check boxes. There is a maximum limit of 20 screens at a time per download.
-  * **C** - External links to 3rd party databases. These links generally point to model organism databases like SGD, MGI, FlyBase, etc. and also large genome resources such as Entrez-Gene and Ensembl.
+  * **3** - Use the Reset button here to reset any currently established filters and go back to viewing all search results.
-  * **D** - Click here to download a dataset consisting only of interactions listed on this search result page.
+  * **4** - Click advanced filters to open up a new more complex form which allows for much more granular searching and filtering on individual fields.
-  * **E** - A quick summary of the number of interactions represented in the current results. In this case there are 105 physical associations and 64 genetic associations listed. The colored bar behind each number denotes the relationship between high throughput and low throughput interactions. In this case, 16% of the physical associations are HTP and 2% of the genetic associations are HTP.
+  * **5** - Click on any heading in the table to sort results by that column. If you hold down shift and click on a second column, it will also sort by that column as well.
-  * **F** - By clicking here, you can activate or deactivate a filter for the interactions shown. Filters allow you to customize which results are featured prominently on searches.
+  * **6** - If you click on the links in the author column, it will take you to a page listing all screens curated for that particular publication.
-  * **G** - This list of buttons allows you to switch the current view and look at the data in an alternate format.
+  * **7** - If you click on the links in the name column, it will take you to a page similar to the one below giving you the full results for a single screen.
-  * **H** - Annotation data for each of the resulting interactors with your search result. As above, the interface provides official names, aliases, and descriptions. Each interactor is hyperlinked to allow for circular searching. Simply click on the name and you will automatically pull up all curated interactions involving that particular gene, without having to redo your keyword searching.
+  * **8** - Any text underlined in orange can be moused over for additional details
-  * **I** - Quick summary showing that this record (SSK1) has supporting evidence from 4 different associations. The green color represents that all 4 are genetic. You can mouse over this box to get more details or click it to get a summary listing directly below it. In the 'Summary' view interactors are ordered acccording to the following scheme:Protein interactions are weighted greater than genetic interactions (1.5 vs. 1.0). Any interactions you have filtered out are given a weighting of 0.01. So if STE11 has 10 protein and 10 genetic interactions it gets a score of 25. The interactors are then ordered by score descending.
+  * **9** - Any blue plus signs can be clicked to expand the text displayed
-  * **J** - Summary table showing grouped interactions and their associated annotation. You can click on the white speech bubbles behind each experimental evidence code to see a description of that code. This table is initially not show, but is displayed when clicking the summary box shown in item I.
+  * **10** - The blue speech bubble in the notes column can be moused over to see additional text added by our curation team specific to this result.
-  * **K** - Publication supporting this association. You can click on the speech bubble to display more details about the publication or click on the author name to go to a separate page where you can download all interactions associated with that publication. Publications show the first authors last name and the date in which the publication was published.
-  * **L** - If an association has additional notes, such as phenotypes, qualifications, modifications, quantitative scores, etc, you will see small icons in the notes column. Simply click on the icons to see a detailed listing of the information available.
+===== Individual Screen Summary =====
-  * **M** - If an association is represented by physical experimental evidence codes, the associated boxes will be orange in color.
-  * **O** - If an interactor has both physical and genetic experimental evidence codes, the summary will display multiple boxes showing each different type separately.
+{{:orcs:screen_summary.png?800|}}
+==== Layout Legend ====
+  * **1** - The name of the screen being shown. You can click on the authors here as well, to go back to the publication page and see all screens associated with that publication.
+  * **2** - List of annotated details about a screen. Any details in blue can be clicked on to see all screens in the database using a similar term in a similar category.
+  * **3** - Details on how significance was determined for a screen. This area lets you know how the original authors distinguished between hits and non-hits. In some cases, this is unclear (which will be indicated) or all results may be considered to be hits.
+  * **4** - Additional curator notes. In the event that more details about a screen are required, this area will contain specific notes from our curation team about the screen.
+  * **5** - A showing a rough distribution of score values. If a dropdown list appears in the top right, you can use it to switch the score value the graph is currently representing.
+  * **6** - Click the download supplementary link to download original supplementary files uploaded by our curation team that relate to the data shown in the table below.
+  * **7** - Use this field to perform quick filters of the data shown in the table below. For example, a search for "STE*" might return 1 or more rows where a gene name beginning with STE was found. For more granular searching, refer to **9**.
+  * **8** - This is a summary of the results shown in the table below. You can click on download

BioGRID ORCS Results Layouts

Differences