Frequently Asked Questions
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network_viewer:frequently_asked_questions [2015/04/29 19:35] biogridadmin |
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The minimum evidence select option allows you to show/hide edges based on the number of publications referencing the association. The higher the number, the more evidence in support of that link. | The minimum evidence select option allows you to show/hide edges based on the number of publications referencing the association. The higher the number, the more evidence in support of that link. | ||
- | ==== Why aren't all the interactions shown in the summary view also shown in the network view? ==== | + | ===== Why aren't all the interactions shown in the summary view also shown in the network view? ===== |
In a very small number of cases (less than 0.001%), the number of interactions is too high to display via a graphical network (would crash your browser). In these cases, we've simply used a higher minimum evidence cutoff (shown in the minimum evidence field) to generate a smaller network. All interactions are still accessible via the summary and sortable table views. | In a very small number of cases (less than 0.001%), the number of interactions is too high to display via a graphical network (would crash your browser). In these cases, we've simply used a higher minimum evidence cutoff (shown in the minimum evidence field) to generate a smaller network. All interactions are still accessible via the summary and sortable table views. | ||
- | ==== What do the different node sizes indicate? ==== | + | ===== What do the different node sizes indicate? ===== |
Node size in the network view is a reflection of the number of edges to/from that node. The larger the node, the more edges attached to it. | Node size in the network view is a reflection of the number of edges to/from that node. The larger the node, the more edges attached to it. | ||
- | ==== What do the thicker edge sizes indicate? ==== | + | ===== What do the thicker edge sizes indicate? ===== |
Edge size in the network view is a reflection of the number of publications supporting the association. The thicker the edge, the more publications supporting its existence. | Edge size in the network view is a reflection of the number of publications supporting the association. The thicker the edge, the more publications supporting its existence. | ||
- | ==== How do I bring up the context menu on a Mac? ==== | + | ===== How do I bring up the context menu on a Mac? ===== |
While this is always a work in progress, if you have a mouse with no right click option, you can use the OS X options of CONTROL+LEFT CLICK or Two Fingers on the Touch Pad to generate a right click. We are currently working on some options to make this more accessible in the near future. | While this is always a work in progress, if you have a mouse with no right click option, you can use the OS X options of CONTROL+LEFT CLICK or Two Fingers on the Touch Pad to generate a right click. We are currently working on some options to make this more accessible in the near future. | ||
- | ==== What do the colors on nodes/edges represent? ==== | + | ===== What do the colors on nodes/edges represent? ===== |
If you click on the "Help" menu from the menu bar above the network, you can click on "Graph Legend." This will generate a popup notification that will display a detailed breakdown of both node and edge colors. | If you click on the "Help" menu from the menu bar above the network, you can click on "Graph Legend." This will generate a popup notification that will display a detailed breakdown of both node and edge colors. | ||