High Throughput Publications in BioGRID
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| - | All papers in biogrid with >100 interaction evidences are described in the table below. Publications which have provided confidence scores or quantifiers for their interactions which have been loaded into BioGRID are indicated in the 'Score' column. For some publications, only a subset of all possible interactions have been loaded into BioGRID, based on a score cut-off suggested by the publication or authors. This cut-off is described in the 'Comments' column. | + | Publications in biogrid with more than 100 interaction evidences are described in the table below. Those which have provided confidence scores or quantifiers for their interactions which have been loaded into BioGRID are indicated in the 'Score' column. For some publications, only a subset of all possible interactions have been loaded, based on a score cut-off suggested by the publication or authors. Where known this cut-off is described in the 'Comments' column. |
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| |16157669|Daniel|2006|S.cerevisiae|204 Synthetic Lethality|No| | | |16157669|Daniel|2006|S.cerevisiae|204 Synthetic Lethality|No| | | ||
| |16172405|Measday|2005|S.cerevisiae|42 Synthetic Lethality;175 Synthetic Growth Defect|No| | | |16172405|Measday|2005|S.cerevisiae|42 Synthetic Lethality;175 Synthetic Growth Defect|No| | | ||
| - | |16269340|Schuldiner|2005|S.cerevisiae|5402 Phenotypic Enhancement;1430 Phenotypic Suppression|Yes|What was the cut-off used for the score and why?| | + | |16269340|Schuldiner|2005|S.cerevisiae|5402 Phenotypic Enhancement;1430 Phenotypic Suppression|Yes| | |
| |16319894|Ptacek|2005|S.cerevisiae|4183 Biochemical Activity|No| | | |16319894|Ptacek|2005|S.cerevisiae|4183 Biochemical Activity|No| | | ||
| |16429126|Gavin|2006|S.cerevisiae|7592 Affinity Capture-MS|No| | | |16429126|Gavin|2006|S.cerevisiae|7592 Affinity Capture-MS|No| | | ||
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| |17167106|Haarer|2007|S.cerevisiae|201 Synthetic Haploinsufficiency|No| | | |17167106|Haarer|2007|S.cerevisiae|201 Synthetic Haploinsufficiency|No| | | ||
| |17200106|Collins|2007|S.cerevisiae|9064 Affinity Capture-MS|Yes|Computationally derived; loaded only those identified as high confidence by author| | |17200106|Collins|2007|S.cerevisiae|9064 Affinity Capture-MS|Yes|Computationally derived; loaded only those identified as high confidence by author| | ||
| - | |17314980|Collins|2007|S.cerevisiae|11606 Phenotypic Enhancement;2815 Phenotypic Suppression|Yes|What was the cut-off used for the score and why?| | + | |17314980|Collins|2007|S.cerevisiae|11606 Phenotypic Enhancement;2815 Phenotypic Suppression|Yes| | |
| |17507646|Aronova|2007|S.cerevisiae|102 Co-fractionation|No| | | |17507646|Aronova|2007|S.cerevisiae|102 Co-fractionation|No| | | ||
| |17634282|Wong|2007|S.cerevisiae|604 Two-hybrid|No|Only multiple screen hits loaded.| | |17634282|Wong|2007|S.cerevisiae|604 Two-hybrid|No|Only multiple screen hits loaded.| | ||
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| |18627629|Logan|2008|S.cerevisiae|114 Synthetic Lethality; 110 Synthetic Growth Defect|No| | | |18627629|Logan|2008|S.cerevisiae|114 Synthetic Lethality; 110 Synthetic Growth Defect|No| | | ||
| |18667435|Colomina|2008|S.cerevisiae|317 Protein-RNA|No| | | |18667435|Colomina|2008|S.cerevisiae|317 Protein-RNA|No| | | ||
| - | |18676811|Lin|2008|S.cerevisiae|772 Synthetic Lethality; 1720 Synthetic Growth Defect; 102 Synthetic Rescue|No| | | + | |18676811|Lin|2008|S.cerevisiae|772 Synthetic Lethality; 1720 Synthetic Growth Defect; 102 Synthetic Rescue|No| | |
| |18719252|Yu|2008|S.cerevisiae|1778 Two-hybrid|No| | | |18719252|Yu|2008|S.cerevisiae|1778 Two-hybrid|No| | | ||
| |18780730|Sinha|2008|S.cerevisiae|988 Synthetic Growth Defect|No| | | |18780730|Sinha|2008|S.cerevisiae|988 Synthetic Growth Defect|No| | | ||
| |18805955|Hasegawa|2008|S.cerevisiae|1092 Affinity Capture-RNA|No| | | |18805955|Hasegawa|2008|S.cerevisiae|1092 Affinity Capture-RNA|No| | | ||
| |18845848|Addinall|2008|S.cerevisiae|20 Synthetic Lethality; 126 Synthetic Growth Defect; 240 Synthetic Rescue|No| | | |18845848|Addinall|2008|S.cerevisiae|20 Synthetic Lethality; 126 Synthetic Growth Defect; 240 Synthetic Rescue|No| | | ||
| - | |19061648|Wilmes|2008|S.cerevisiae|3803 Phenotypic Enhancement;2655 Phenotypic Suppression|Yes|What was the cut-off used for the score and why? | | + | |19061648|Wilmes|2008|S.cerevisiae|3803 Phenotypic Enhancement;2655 Phenotypic Suppression|Yes| | |
| - | |19269370|Fiedler|2009|S.cerevisiae|2642 Phenotypic Enhancement;1409 Phenotypic Suppression|Yes|What was the cut-off used for the score and why? | | + | |19269370|Fiedler|2009|S.cerevisiae|2642 Phenotypic Enhancement;1409 Phenotypic Suppression|Yes| | |
| - | |19536198|Gong|2009|S.cerevisiae|1420 Affinity Capture-MS|Yes| How were the 21,687 high confidence interactions filtered to 1420? Can we load confidence scores?| | + | |19536198|Gong|2009|S.cerevisiae|1420 Affinity Capture-MS|Yes|The authors note that 21,687 interactions were identified as high confidence based on experimental scores and the distribution of scores in reference databases. Only 1420 high confidence interactions were submitted to BioGRID by the authors because they met the additional criteria of containing reciprocal interactors in terms of the bait-prey relationship. | |
| - | |18818364|Roguev|2008|S.pombe|5769 Phenotypic Enhancement;1811 Phenotypic Suppression|Yes|What was the cut-off used for the score and why?| | + | |18818364|Roguev|2008|S.pombe|5769 Phenotypic Enhancement;1811 Phenotypic Suppression|Yes| | |
| |18931302|Dixon|2008|S.pombe|670 Synthetic Growth Defect|No| | | |18931302|Dixon|2008|S.pombe|670 Synthetic Growth Defect|No| | | ||
| |14704431|Li|2004|C.elegans|4422 Two-hybrid|No|Core and non-core interactions loaded| | |14704431|Li|2004|C.elegans|4422 Two-hybrid|No|Core and non-core interactions loaded| | ||
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| |9883586|Maixner|1998|D.melanogaster|9 Phenotypic Enhancement; 128 Phenotypic Suppression|No| | | |9883586|Maixner|1998|D.melanogaster|9 Phenotypic Enhancement; 128 Phenotypic Suppression|No| | | ||
| |11901120|Peña-Rangel|2002|D.melanogaster|97 Phenotypic Enhancement; 40 Phenotypic Suppression|No| | | |11901120|Peña-Rangel|2002|D.melanogaster|97 Phenotypic Enhancement; 40 Phenotypic Suppression|No| | | ||
| - | |14605208|Giot|2003|D.melanogaster|20193 Two-hybrid|No|All interactions loaded; author: 'we obtained a high-confidence map of 4780 unique interactions'-- load confidence score?| | + | |14605208|Giot|2003|D.melanogaster|20193 Two-hybrid|No| | |
| |15575970|Stanyon|2004|D.melanogaster|1769 Two-hybrid|No| | | |15575970|Stanyon|2004|D.melanogaster|1769 Two-hybrid|No| | | ||
| |12795696|Risseeuw|2003|A.thaliana|128 Two-hybrid|No| | | |12795696|Risseeuw|2003|A.thaliana|128 Two-hybrid|No| | | ||
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| |16169070|Stelzl|2005|H.sapiens|2527 Two-hybrid |No|Interactions described by author as Medium and High quality were loaded| | |16169070|Stelzl|2005|H.sapiens|2527 Two-hybrid |No|Interactions described by author as Medium and High quality were loaded| | ||
| |16189514|Rual|2005|H.sapiens|2744 Two-hybrid; 111 Affinity Capture-Western|No| | | |16189514|Rual|2005|H.sapiens|2744 Two-hybrid; 111 Affinity Capture-Western|No| | | ||
| - | |17353931|Ewing|2007|H.sapiens|2068 Two-hybrid|Yes|What was the confidence score cut-off?| | + | |17353931|Ewing|2007|H.sapiens|2068 Two-hybrid|Yes| | |
| |18782753|Goudreault|2009|H.sapiens|288 Affinity Capture-MS ; 20 Affinity Capture-Western|No| | | |18782753|Goudreault|2009|H.sapiens|288 Affinity Capture-MS ; 20 Affinity Capture-Western|No| | | ||
| - | |19690564|van Wijk|2009|H.sapiens|346 Two-hybrid|No|LL set identified by authors as hi confidence| | + | |19690564|van Wijk|2009|H.sapiens|346 Two-hybrid|No|LL set identified by authors as high confidence| |
| - | |19549727|Markson|2009|H.sapiens|557 Two-hybrid|Yes|Interactions with scores 4 and 5 identified by authors as hi confidence| | + | |19549727|Markson|2009|H.sapiens|557 Two-hybrid|Yes|Interactions with scores 4 and 5 identified by authors as high confidence| |
| + | |20098747|Fenner|2010|H.sapiens|108 Reconstituted Complex; 6 Two-hybrid; 6 Affinity Capture-Western|No| | | ||