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 All papers ​Publications ​in biogrid with >more than 100 interaction evidences are described in the table below. ​Publications ​Those which have provided confidence scores or quantifiers for their interactions which have been loaded into BioGRID are indicated in the '​Score'​ column. For some publications,​ only a subset of all possible interactions have been loadedinto BioGRID, based on a score cut-off suggested by the publication or authors. ​This Where known this cut-off is described in the '​Comments'​ column.
 
 
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 |16157669|Daniel|2006|S.cerevisiae|204 Synthetic Lethality|No| |
 |16172405|Measday|2005|S.cerevisiae|42 Synthetic Lethality;​175 Synthetic Growth Defect|No| |
 |16269340|Schuldiner|2005|S.cerevisiae|5402 Phenotypic Enhancement;​1430 Phenotypic Suppression|Yes| ​What was the cut-off used for the score and why?|
 |16319894|Ptacek|2005|S.cerevisiae|4183 Biochemical Activity|No| |
 |16429126|Gavin|2006|S.cerevisiae|7592 Affinity Capture-MS|No| |
@@ Line -57,5 +57,5 @@ removed created
 |17167106|Haarer|2007|S.cerevisiae|201 Synthetic Haploinsufficiency|No| |
 |17200106|Collins|2007|S.cerevisiae|9064 Affinity Capture-MS|Yes|Computationally derived; loaded only those identified as high confidence by author|
 |17314980|Collins|2007|S.cerevisiae|11606 Phenotypic Enhancement;​2815 Phenotypic Suppression|Yes| ​What was the cut-off used for the score and why?|
 |17507646|Aronova|2007|S.cerevisiae|102 Co-fractionation|No| |
 |17634282|Wong|2007|S.cerevisiae|604 Two-hybrid|No|Only multiple screen hits loaded.|
@@ Line -70,13 +70,13 @@ removed created
 |18627629|Logan|2008|S.cerevisiae|114 Synthetic Lethality; 110  Synthetic Growth Defect|No| |
 |18667435|Colomina|2008|S.cerevisiae|317 Protein-RNA|No| |
 |18676811|Lin|2008|S.cerevisiae|772 Synthetic Lethality; 1720  Synthetic Growth Defect; 102 Synthetic Rescue|No| | 
 |18719252|Yu|2008|S.cerevisiae|1778 Two-hybrid|No| |
 |18780730|Sinha|2008|S.cerevisiae|988 Synthetic Growth Defect|No| |
 |18805955|Hasegawa|2008|S.cerevisiae|1092 Affinity Capture-RNA|No| |
 |18845848|Addinall|2008|S.cerevisiae|20 Synthetic Lethality; 126  Synthetic Growth Defect; 240 Synthetic Rescue|No| |
 |19061648|Wilmes|2008|S.cerevisiae|3803 Phenotypic Enhancement;​2655 Phenotypic Suppression|Yes| ​What was the cut-off used for the score and why? | 
 |19269370|Fiedler|2009|S.cerevisiae|2642 Phenotypic Enhancement;​1409 Phenotypic Suppression|Yes| ​What was the cut-off used for the score and why? | 
 |19536198|Gong|2009|S.cerevisiae|1420 Affinity Capture-MS|Yes|How were the The authors note that 21,​687 ​interactions were identified as high confidence based on experimental scores and the distribution of scores in reference databases. ​ Only 1420 high confidence interactions ​filtered ​were submitted ​to 1420? Can we load confidence scores?BioGRID by the authors because they met the additional criteria of containing reciprocal interactors in terms of the bait-prey relationship. ​| 
 |18818364|Roguev|2008|S.pombe|5769 Phenotypic Enhancement;​1811 Phenotypic Suppression|Yes| ​What was the cut-off used for the score and why?|
 |18931302|Dixon|2008|S.pombe|670 Synthetic Growth Defect|No| |
 |14704431|Li|2004|C.elegans|4422 Two-hybrid|No|Core and non-core interactions loaded|
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 |9883586|Maixner|1998|D.melanogaster|9 Phenotypic Enhancement;​ 128 Phenotypic Suppression|No| |
 |11901120|Peña-Rangel|2002|D.melanogaster|97 Phenotypic Enhancement;​ 40 Phenotypic Suppression|No| |
 |14605208|Giot|2003|D.melanogaster|20193 Two-hybrid|No| ​All interactions loaded; author: 'we obtained a high-confidence map of 4780 unique interactions'​-- load confidence score?|
 |15575970|Stanyon|2004|D.melanogaster|1769 Two-hybrid|No| |
 |12795696|Risseeuw|2003|A.thaliana|128 Two-hybrid|No| |
@@ Line -100,4 +100,7 @@ removed created
 |16169070|Stelzl|2005|H.sapiens|2527 Two-hybrid |No|Interactions described by author as Medium and High quality were loaded|
 |16189514|Rual|2005|H.sapiens|2744 Two-hybrid; 111 Affinity Capture-Western|No| |
 |17353931|Ewing|2007|H.sapiens|2068 Two-hybrid|Yes| ​What was the confidence score cut-off?|
 |18782753|Goudreault|2009|H.sapiens|288 Affinity Capture-MS ; 20 Affinity Capture-Western|No| |
 |19690564|van Wijk|2009|H.sapiens|346 Two-hybrid|No|LL set identified by authors as high confidence|
 |19549727|Markson|2009|H.sapiens|557 Two-hybrid|Yes|Interactions with scores 4 and 5 identified by authors as high confidence|
 |20098747|Fenner|2010|H.sapiens|108 Reconstituted Complex; 6 Two-hybrid; 6 Affinity Capture-Western|No| |
 
highthroughput.1273069187.txt.gz · Last modified: 2017/08/08 12:52 (external edit)