| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 3 | 3 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 3 | 2 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 87,166 | 77,633 | 12,356 | 2,378 |
| GENETIC | 367 | 299 | 328 | 166 |
| COMBINED | 87,533 | 77,839 | 12,407 | 2,461 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 684 | 598 | 609 | 233 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 684 | 598 | 609 | 233 |
| Caenorhabditis elegans | PHYSICAL | 47,037 | 42,489 | 9,096 | 1,545 |
| GENETIC | 2,369 | 2,302 | 1,159 | 41 |
| COMBINED | 49,406 | 44,735 | 9,278 | 1,568 |
| Candida albicans (SC5314) | PHYSICAL | 1,674 | 1,438 | 1,022 | 177 |
| GENETIC | 539 | 459 | 382 | 43 |
| COMBINED | 2,213 | 1,872 | 1,288 | 199 |
| Canis familiaris | PHYSICAL | 559 | 540 | 530 | 35 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 559 | 540 | 530 | 35 |
| Cavia porcellus | PHYSICAL | 10 | 8 | 14 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 8 | 14 | 8 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 72 | 63 | 88 | 26 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 72 | 63 | 88 | 26 |
| Cricetulus griseus | PHYSICAL | 83 | 78 | 96 | 22 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 83 | 78 | 96 | 22 |
| Danio rerio | PHYSICAL | 597 | 552 | 532 | 55 |
| GENETIC | 72 | 66 | 68 | 32 |
| COMBINED | 669 | 614 | 588 | 84 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 82,457 | 69,555 | 11,133 | 4,396 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 97,805 | 78,843 | 11,405 | 8,068 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 5 | 3 | 6 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 6 | 5 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 10 | 10 | 12 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 10 | 12 | 3 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,438 | 2,228 | 1,357 | 41 |
| GENETIC | 36 | 35 | 46 | 13 |
| COMBINED | 2,474 | 2,262 | 1,396 | 54 |
| Escherichia coli (K12/W3110) | PHYSICAL | 23,978 | 23,911 | 3,440 | 5 |
| GENETIC | 186,493 | 184,791 | 3,980 | 5 |
| COMBINED | 210,471 | 207,576 | 4,174 | 10 |
| Felis Catus | PHYSICAL | 7 | 2 | 4 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 7 | 2 | 4 | 7 |
| Gallus gallus | PHYSICAL | 566 | 482 | 456 | 120 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 579 | 491 | 464 | 129 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 617 | 493 | 494 | 59 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 617 | 493 | 494 | 59 |
| Homo sapiens | PHYSICAL | 1,497,651 | 1,143,794 | 29,513 | 41,192 |
| GENETIC | 21,073 | 20,527 | 7,906 | 420 |
| COMBINED | 1,518,724 | 1,162,292 | 29,996 | 41,381 |
| Human Herpesvirus 1 | PHYSICAL | 481 | 397 | 324 | 71 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 487 | 402 | 329 | 71 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 16 | 12 | 15 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 12 | 15 | 6 |
| Human Herpesvirus 4 | PHYSICAL | 685 | 544 | 505 | 60 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 685 | 544 | 505 | 60 |
| Human Herpesvirus 5 | PHYSICAL | 211 | 141 | 153 | 43 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 211 | 141 | 153 | 43 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 1,035 | 917 | 904 | 51 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,035 | 917 | 904 | 51 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,612 | 1,780 | 1,480 | 413 |
| GENETIC | 3 | 2 | 4 | 2 |
| COMBINED | 2,615 | 1,780 | 1,480 | 414 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 91 | 80 | 63 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 80 | 63 | 14 |
| Human papillomavirus (10) | PHYSICAL | 5 | 3 | 5 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 5 | 4 |
| Human papillomavirus (11) | PHYSICAL | 549 | 520 | 497 | 32 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 549 | 520 | 497 | 32 |
| Human papillomavirus (16) | PHYSICAL | 3,902 | 3,197 | 2,764 | 217 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3,902 | 3,197 | 2,764 | 217 |
| Human papillomavirus (18) | PHYSICAL | 781 | 601 | 591 | 77 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 781 | 601 | 591 | 77 |
| Human papillomavirus (1a) | PHYSICAL | 168 | 153 | 150 | 12 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 168 | 153 | 150 | 12 |
| Human papillomavirus (26) | PHYSICAL | 6 | 6 | 7 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 6 | 6 | 7 | 1 |
| Human papillomavirus (31) | PHYSICAL | 607 | 564 | 541 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 607 | 564 | 541 | 19 |
| Human papillomavirus (32) | PHYSICAL | 73 | 68 | 66 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 73 | 68 | 66 | 3 |
| Human papillomavirus (33) | PHYSICAL | 216 | 189 | 187 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 216 | 189 | 187 | 17 |
| Human papillomavirus (35) | PHYSICAL | 8 | 8 | 9 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 8 | 9 | 1 |
| Human papillomavirus (38) | PHYSICAL | 161 | 149 | 149 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 161 | 149 | 149 | 7 |
| Human papillomavirus (4) | PHYSICAL | 6 | 4 | 8 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 6 | 4 | 8 | 4 |
| Human papillomavirus (41) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (45) | PHYSICAL | 45 | 41 | 43 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 45 | 41 | 43 | 3 |
| Human papillomavirus (5) | PHYSICAL | 298 | 283 | 278 | 11 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 298 | 283 | 278 | 11 |
| Human papillomavirus (52) | PHYSICAL | 30 | 28 | 29 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 30 | 28 | 29 | 2 |
| Human papillomavirus (54) | PHYSICAL | 3 | 3 | 5 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 2 |
| Human papillomavirus (58) | PHYSICAL | 15 | 10 | 12 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 15 | 10 | 12 | 5 |
| Human papillomavirus (6b) | PHYSICAL | 649 | 606 | 485 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 649 | 606 | 485 | 28 |
| Human papillomavirus (7) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Human papillomavirus (8) | PHYSICAL | 643 | 583 | 561 | 20 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 643 | 583 | 561 | 20 |
| Human papillomavirus (9) | PHYSICAL | 81 | 79 | 78 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 81 | 79 | 78 | 3 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 318 | 307 | 313 | 20 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 318 | 307 | 313 | 20 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 1,169 | 1,073 | 998 | 104 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,169 | 1,073 | 998 | 104 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Murid Herpesvirus 1 | PHYSICAL | 2 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 1 |
| Mus musculus | PHYSICAL | 112,714 | 102,453 | 19,404 | 5,006 |
| GENETIC | 961 | 913 | 849 | 217 |
| COMBINED | 113,675 | 103,274 | 19,525 | 5,159 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Myotis lucifugus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Neurospora crassa (OR74A) | PHYSICAL | 34 | 33 | 37 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 34 | 33 | 37 | 4 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 401 | 356 | 370 | 77 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 401 | 356 | 370 | 77 |
| Oryza sativa (Japonica) | PHYSICAL | 364 | 344 | 328 | 23 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 366 | 346 | 328 | 23 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 3,808 | 3,755 | 1,829 | 12 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3,808 | 3,755 | 1,829 | 12 |
| Rattus norvegicus | PHYSICAL | 12,271 | 10,773 | 6,258 | 1,451 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 12,290 | 10,783 | 6,268 | 1,454 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 286,821 | 198,560 | 7,222 | 11,289 |
| GENETIC | 600,374 | 457,599 | 5,988 | 10,915 |
| COMBINED | 887,195 | 636,461 | 7,441 | 18,593 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 20,158 | 15,314 | 3,872 | 1,735 |
| GENETIC | 62,842 | 52,872 | 3,654 | 2,079 |
| COMBINED | 83,000 | 66,973 | 4,767 | 3,039 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 2,569 | 1,976 | 1,569 | 344 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,569 | 1,976 | 1,569 | 344 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 58,760 | 36,669 | 8,763 | 1,701 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 58,760 | 36,669 | 8,763 | 1,701 |
| Simian Immunodeficiency Virus | PHYSICAL | 37 | 18 | 21 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 37 | 18 | 21 | 18 |
| Simian Virus 40 | PHYSICAL | 18 | 8 | 9 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 8 | 9 | 13 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 124 | 110 | 134 | 51 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 124 | 110 | 134 | 51 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 309 | 293 | 314 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 309 | 293 | 314 | 8 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 2,483 | 2,086 | 1,602 | 284 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 2,490 | 2,093 | 1,611 | 287 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 2,146,174 | 1,660,023 | 90,577 | 65,317 |
| GENETIC | 889,782 | 729,968 | 26,946 | 18,388 |
| COMBINED | 3,035,956 | 2,364,201 | 93,373 | 77,897 |