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Online Tools and Resources

Listed on this page are tools, software, and resources either written by the BioGRID or a third party that can help you make more use of BioGRID interaction data. All tools and resources are released WITHOUT ANY WARRANTY and are free to be used by both academic and commercial entities for research purposes only. If you know of a useful software tool that should be in this listing, let us know at biogridadmin@gmail.com.

Partner Resources

  • PhosphoGRID - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes.
  • PSICQUIC - PSICQUIC is a web service that attempts to standardize access to molecular interaction databases programtatically.

Network Visualization

  • Osprey: Network Visualization System - Osprey is a software platform for the visualization of complex interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interaction data maintained by the BioGRID.
  • Cytoscape - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
  • BioGRID Tab File Loader Plugin for Cytoscape - This plugin was developed to make it simpler to import data from BioGRID .tab files, and to allow multiple redundant interactions (evidences), represented by a single line in a .tab file, to be imported into Cytoscape as a single edge with multiple evidence code and publication annotation.

Data Management

  • ProHits - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions.
 
tools.1271681822.txt.gz · Last modified: 2017/08/08 12:52 (external edit)