Online Tools and Resources
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| Listed on this page are tools, software, and resources either written by the BioGRID team or a third party that can help you make use of BioGRID interaction data. All tools and resources are released **WITHOUT ANY WARRANTY** and are free to both academic and commercial entities for research purposes only. If you know of a useful software tool that should be in this listing, let us know at **[[biogridadmin@gmail.com]]**. | Listed on this page are tools, software, and resources either written by the BioGRID team or a third party that can help you make use of BioGRID interaction data. All tools and resources are released **WITHOUT ANY WARRANTY** and are free to both academic and commercial entities for research purposes only. If you know of a useful software tool that should be in this listing, let us know at **[[biogridadmin@gmail.com]]**. | ||
| ===== Partner Resources ===== | ===== Partner Resources ===== | ||
| + | * **[[https://orcs.thebiogrid.org|BioGRID ORCS]]** - The BioGRID Open Respository of CRISPR Screens (ORCS) is a publicly accessible repository of CRISPR screens compiled through comprehensive curation efforts. | ||
| * **[[https://phosphogrid.org|PhosphoGRID]]** - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes. | * **[[https://phosphogrid.org|PhosphoGRID]]** - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes. | ||
| * **[[https://yeastkinome.org|Yeast Kinome]]** - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource. | * **[[https://yeastkinome.org|Yeast Kinome]]** - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource. | ||
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| * **[[http://www.cytoscape.org/|Cytoscape]]** - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles. | * **[[http://www.cytoscape.org/|Cytoscape]]** - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles. | ||
| * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. | * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. | ||
| + | * **[[https://prohits-viz.org/|Prohits-Viz]]** - A suite of webtools for analyzing and visualizing screens and protein-protein interaction data | ||
| * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | ||
| * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | ||
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| * **[[http://code.google.com/p/psicquic/|PSICQUIC]]** - PSICQUIC is a web service that attempts to standardize access to molecular interaction databases programatically. | * **[[http://code.google.com/p/psicquic/|PSICQUIC]]** - PSICQUIC is a web service that attempts to standardize access to molecular interaction databases programatically. | ||
| * **[[https://chrome.google.com/webstore/detail/gene-info/jggendahejbhkghnachhlomkkheomchp?hl=en-US|Gene Info Chrome Plugin]]** - View gene information (including BioGRID interactions) by double clicking a gene name or accession on any web page. | * **[[https://chrome.google.com/webstore/detail/gene-info/jggendahejbhkghnachhlomkkheomchp?hl=en-US|Gene Info Chrome Plugin]]** - View gene information (including BioGRID interactions) by double clicking a gene name or accession on any web page. | ||
| + | * **[[http://www.pathwaycommons.org/|Pathway Commons]]** - Access and discover data integrated from public pathway and interactions databases. | ||