Online Tools and Resources
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| * **[[https://osprey.thebiogrid.org|Osprey: Network Visualization System]]** - Osprey is a software platform for the visualization of complex interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interaction data maintained by the BioGRID. | * **[[https://osprey.thebiogrid.org|Osprey: Network Visualization System]]** - Osprey is a software platform for the visualization of complex interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interaction data maintained by the BioGRID. | ||
| * **[[http://www.cytoscape.org/|Cytoscape]]** - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles. | * **[[http://www.cytoscape.org/|Cytoscape]]** - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles. | ||
| + | * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. | ||
| * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | ||
| * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | ||
| - | * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. | ||
| ===== Data Management ===== | ===== Data Management ===== | ||
| * **[[http://prohitsms.com/|ProHits]]** - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions. | * **[[http://prohitsms.com/|ProHits]]** - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions. | ||