Online Tools and Resources
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| * **[[https://phosphogrid.org|PhosphoGRID]]** - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes. | * **[[https://phosphogrid.org|PhosphoGRID]]** - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes. | ||
| * **[[https://yeastkinome.org|Yeast Kinome]]** - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource. | * **[[https://yeastkinome.org|Yeast Kinome]]** - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource. | ||
| - | * **[[http://www.pathwaycommons.org/pc/home.do|Pathway Commons]]** - Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. | + | * **[[https://www.pathwaycommons.org|Pathway Commons]]** - Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. |
| * **[[http://wodaklab.org/iRefWeb|iRefWeb]]** - The iRefWeb interface groups interaction records from the different databases into a single non-redundant view. | * **[[http://wodaklab.org/iRefWeb|iRefWeb]]** - The iRefWeb interface groups interaction records from the different databases into a single non-redundant view. | ||
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| * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data. | ||
| * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network. | ||
| + | * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. | ||
| ===== Data Management ===== | ===== Data Management ===== | ||
| * **[[http://prohitsms.com/|ProHits]]** - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions. | * **[[http://prohitsms.com/|ProHits]]** - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions. | ||