PSI-MI XML 2.5 Formatted Downloads
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psi-mi_xml_version_2.5 [2010/04/20 09:49] biogridadmin created |
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| The **[[http://www.psidev.info/index.php?q=node/60|PSI MI format]]** is a means of exchanging data on molecular interactions, maintained by the HUPO Proteomics Standards Initiative. For a diagram of the PSI 2.5 XML schema **[[http://psidev.sourceforge.net/mi/rel25/doc/|click here]]**. BioGRID interactions are annotated with the terms described in the **[[experimental_systems|Experimental Evidence Codes]]** section to distinguish between different types of evidence supporting an interaction. The BioGRID PSI MI 2.5 XML files primarily contain **[[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=MI|MI ontology terms]]** to describe experimental methods and other interaction details; please see the **{{:biogrid_mi_mapping.xls|BioGRID/MI mapping file}}** which explains how the MI terms in the BioGRID PSI MI XML file were chosen. | The **[[http://www.psidev.info/index.php?q=node/60|PSI MI format]]** is a means of exchanging data on molecular interactions, maintained by the HUPO Proteomics Standards Initiative. For a diagram of the PSI 2.5 XML schema **[[http://psidev.sourceforge.net/mi/rel25/doc/|click here]]**. BioGRID interactions are annotated with the terms described in the **[[experimental_systems|Experimental Evidence Codes]]** section to distinguish between different types of evidence supporting an interaction. The BioGRID PSI MI 2.5 XML files primarily contain **[[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=MI|MI ontology terms]]** to describe experimental methods and other interaction details; please see the **{{:biogrid_mi_mapping.xls|BioGRID/MI mapping file}}** which explains how the MI terms in the BioGRID PSI MI XML file were chosen. | ||
| - | The original BioGRID evidence code used for the annotation can also be found in the PSI MI XML file in the entrySet/entry/interactionList/interaction/attributeList/attribute XML tag with attribute name = //BioGRID Evidence Code//. | + | The original BioGRID evidence code used for the annotation can also be found in the PSI MI XML file in the entrySet > entry > interactionList > interaction > attributeList > attribute XML tag with attribute name = //BioGRID Evidence Code//. |
| [[downloads|Back to BioGRID Download Formats]] | [[downloads|Back to BioGRID Download Formats]] | ||