BioGRID ORCS - Example Searches
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orcs:example_searches [2020/07/22 02:51] biogridadmin |
orcs:example_searches [2020/08/07 21:27] biogridadmin |
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| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=CAS9&organism=all|CAS9]]** - Search for screens using the enzyme "CAS9" | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=CAS9&organism=all|CAS9]]** - Search for screens using the enzyme "CAS9" | ||
| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=etoposide%2C+bleomycin&organism=all|Etoposide,Bleomycin]]** - Search for screens involving the chemotherapy medication "Etoposide" or the cancer medication "Bleomycin" | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=etoposide%2C+bleomycin&organism=all|Etoposide,Bleomycin]]** - Search for screens involving the chemotherapy medication "Etoposide" or the cancer medication "Bleomycin" | ||
| - | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=viability&organism=all|viability]]** - Search for screens with the phenotype "viability" | + | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=cell proliferation&organism=all|cell proliferation]]** - Search for screens with the phenotype "cell proliferation" |
| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=MAGECK%7CEDGER&organism=all|MAGeCK,EdgeR]]** - Search for screens using the "Mageck" or "EdgeR" analysis method | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=MAGECK%7CEDGER&organism=all|MAGeCK,EdgeR]]** - Search for screens using the "Mageck" or "EdgeR" analysis method | ||
| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=Gecko&organism=all|Gecko]]** - Search for screens using the "Gecko" CRISPR library | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=Gecko&organism=all|Gecko]]** - Search for screens using the "Gecko" CRISPR library | ||
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| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=A549%2CA2780&organism=all|A549,A2780]]** - Search for screens in "A549" or "A2780" cells | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=A549%2CA2780&organism=all|A549,A2780]]** - Search for screens in "A549" or "A2780" cells | ||
| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=Toxin+Exposure&organism=all|Toxin Exposure]]** - Search for "Toxin Exposure" experiment screens | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=Toxin+Exposure&organism=all|Toxin Exposure]]** - Search for "Toxin Exposure" experiment screens | ||
| - | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=Positive+Selection&organism=all|Positive Selection]]** - Search for "Positive Selection" screen types | ||
| * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=virus&organism=all|Virus]]** - Search for screen's containing the word "Virus" | * **[[https://orcs.thebiogrid.org/Search?searchType=key&search=virus&organism=all|Virus]]** - Search for screen's containing the word "Virus" | ||
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| * **[[https://orcs.thebiogrid.org/Search?searchType=pub&search=%22Haney+MS%22&organism=all|"Haney MS"]]** - Search by an author name. | * **[[https://orcs.thebiogrid.org/Search?searchType=pub&search=%22Haney+MS%22&organism=all|"Haney MS"]]** - Search by an author name. | ||
| * **[[https://orcs.thebiogrid.org/Search?searchType=pub&search=Haney%2C+alimov&organism=all|Haney,Alimov]]** - Search by multiple authors. | * **[[https://orcs.thebiogrid.org/Search?searchType=pub&search=Haney%2C+alimov&organism=all|Haney,Alimov]]** - Search by multiple authors. | ||
| + | * **[[https://orcs.thebiogrid.org/Search?searchType=pub&search=breast+cancer%2C+Colon+Cancer&organism=all|Breast Cancer, Colon Cancer]]** - Search for papers containing text terms like "Breast Cancer" or "Colon Cancer" | ||
| === Ontology Term Searches === | === Ontology Term Searches === | ||
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| * **By Cell Type** - Search by cell types such as "acute myeloid leukemia" or "breast cancer" | * **By Cell Type** - Search by cell types such as "acute myeloid leukemia" or "breast cancer" | ||
| * **By Cell Line** - Search by cell line such as "HEK-293" or "CAMA-1" | * **By Cell Line** - Search by cell line such as "HEK-293" or "CAMA-1" | ||
| - | * **By Screen Type** - Search by screen type such as "Positive selection" or "Negative selection" | ||
| * **By Experiment** - Search by experiment such as "Timecourse" or "Toxin Exposure" | * **By Experiment** - Search by experiment such as "Timecourse" or "Toxin Exposure" | ||
| * **By Library Type** - Search by library type such as "CRISPRa" or "CRISPRn" | * **By Library Type** - Search by library type such as "CRISPRa" or "CRISPRn" | ||
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| * **By Format** - Search by format such as "Pool" | * **By Format** - Search by format such as "Pool" | ||
| * **By Analysis** - Search by Analysis Method such as "MaGeCK", "RANKS", or "STARS" | * **By Analysis** - Search by Analysis Method such as "MaGeCK", "RANKS", or "STARS" | ||
| - | * **By Throughput** - Search by throughput such as "High throughput" or "Low throughput" | ||
| * **By Methodology** - Search by methodology such as "Activation" or "Knockout" | * **By Methodology** - Search by methodology such as "Activation" or "Knockout" | ||