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orcs:curation_guide:metadata_terms [2019/06/27 09:20]
jenn
orcs:curation_guide:metadata_terms [2019/10/03 13:31]
jenn
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 ^  Field Name  ^ Description ​      ^ ^  Field Name  ^ Description ​      ^
-^  Screen Name |Each screen is assigned a number followed by the PubMed ID (e.g. 1-PMID26627737) to ensure publications with mulitple screens have a unique identfier for each individual screen. |+^  Screen Name  |Each screen is assigned a number followed by the PubMed ID (e.g. 1-PMID26627737) to ensure publications with mulitple screens have a unique identfier for each individual screen. |
 ^  Organism ​ | Controlled vocabulary. | ^  Organism ​ | Controlled vocabulary. |
 ^  Screen Type  | [[orcs:​controlled_vocabulary|Controlled vocabulary]] based on survey of the data. Can be easily modified to accomodate new screen types that may be developed. | ^  Screen Type  | [[orcs:​controlled_vocabulary|Controlled vocabulary]] based on survey of the data. Can be easily modified to accomodate new screen types that may be developed. |
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 ^  Cell Line/​Type ​ | Ontology terms from BTO (first choice), EFO (second choice) or CLO (third choice).Additional guidelines for this curation can be [[orcs:​cell_line_guidelines|found here]].| ^  Cell Line/​Type ​ | Ontology terms from BTO (first choice), EFO (second choice) or CLO (third choice).Additional guidelines for this curation can be [[orcs:​cell_line_guidelines|found here]].|
 ^  Phenotype ​ | Ontology terms from APO, CMPO or Controlled Vocabulary as needed. Terms currently in use in ORCS can be [[orcs:​phenotype_terms|found here]]. | ^  Phenotype ​ | Ontology terms from APO, CMPO or Controlled Vocabulary as needed. Terms currently in use in ORCS can be [[orcs:​phenotype_terms|found here]]. |
-^  Analysis Method ​ | [[orcs:controlled_vocabulary5|Controlled vocabulary]] terms generated by survey of the literature. Can easily be modified as new analysis methods are developed. |+^  Analysis Method ​ | [[orcs:controlled_vocabulary6|Controlled vocabulary]] terms generated by survey of the literature. Can easily be modified as new analysis methods are developed. |
 ^  Significance Threshold ​ |If provided by the authors a numeric significance threshold can be applied to any score column entered for a screen. Alternatively if only a list of hits was published the curator can mark the screen data as "all significant"​ or if a yes/no hit vaue was used the author can specify a boolean column. | ^  Significance Threshold ​ |If provided by the authors a numeric significance threshold can be applied to any score column entered for a screen. Alternatively if only a list of hits was published the curator can mark the screen data as "all significant"​ or if a yes/no hit vaue was used the author can specify a boolean column. |
  
 [[:​orcs:​curation_guide|Back to ORCS Curation Guide]] [[:​orcs:​curation_guide|Back to ORCS Curation Guide]]
 
orcs/curation_guide/metadata_terms.txt · Last modified: 2020/06/02 15:20 by rose