BioGRID JSON Formatted Downloads
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| ====== BioGRID JSON Formatted Downloads ====== | ====== BioGRID JSON Formatted Downloads ====== | ||
| The BioGRID JSON format is a custom BioGRID format that is designed to provide the entirety of our curation efforts in a format that is simple to read in using programmatic means via the simple JavaScript Object Notation format. For more information on working with json, here are some useful guides in a variety of popular programming languages. **[[http://php.net/manual/en/book.json.php|PHP]]**, **[[http://json.org/java/|Java]]**, **[[http://docs.python.org/2/library/json.html|Python]]**, **[[http://www.ruby-doc.org/stdlib-2.0/libdoc/json/rdoc/JSON.html|Ruby]]**, **[[http://www.json.org/js.html|JavaScript]]**, **[[http://api.jquery.com/jQuery.getJSON/|jQuery]]**, **[[http://golang.org/pkg/encoding/json/|GO]]**, **[[https://code.google.com/p/rapidjson/|C++]]**, **[[http://msdn.microsoft.com/en-us/library/hh674188.aspx|C#]]** | The BioGRID JSON format is a custom BioGRID format that is designed to provide the entirety of our curation efforts in a format that is simple to read in using programmatic means via the simple JavaScript Object Notation format. For more information on working with json, here are some useful guides in a variety of popular programming languages. **[[http://php.net/manual/en/book.json.php|PHP]]**, **[[http://json.org/java/|Java]]**, **[[http://docs.python.org/2/library/json.html|Python]]**, **[[http://www.ruby-doc.org/stdlib-2.0/libdoc/json/rdoc/JSON.html|Ruby]]**, **[[http://www.json.org/js.html|JavaScript]]**, **[[http://api.jquery.com/jQuery.getJSON/|jQuery]]**, **[[http://golang.org/pkg/encoding/json/|GO]]**, **[[https://code.google.com/p/rapidjson/|C++]]**, **[[http://msdn.microsoft.com/en-us/library/hh674188.aspx|C#]]** | ||
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| - | [[downloads|Back to BioGRID Download Formats]] | ||
| ==== Entry Definitions ==== | ==== Entry Definitions ==== | ||
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| - **QUANTITATION**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | - **QUANTITATION**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | ||
| - **MODIFICATION**. For any Biochemical Activity experiments, this field will be filled with the associated post translational modification. Will be "-" if no modification is reported. | - **MODIFICATION**. For any Biochemical Activity experiments, this field will be filled with the associated post translational modification. Will be "-" if no modification is reported. | ||
| - | - **PHENOTYPES**. If any phenotype info is recorded, it will be provided here separated by "|". Each phenotype will be of the format <phenotype>[<phenotype qualifier>]:<phenotype type>. Note that the phenotype types and qualifiers are optional and will only be present where recorded. Phenotypes may also have multiple qualifiers in which case unique qualifiers will be separated by carat (^). If no phenotype information is available, this field will contain "-". | + | - **ONTOLOGY_TERMS**. If any ontology terms are recorded, they will be provided here in a separate array. The array is indexed by ontology term ids and contains the relevant annotation to go with each term. |
| - **QUALIFICATIONS**. If additional plain text information was recorded for an interaction, it will be listed with unique qualifiers separated by "|". If no qualification is available, this field will contain "-". | - **QUALIFICATIONS**. If additional plain text information was recorded for an interaction, it will be listed with unique qualifiers separated by "|". If no qualification is available, this field will contain "-". | ||
| - **TAGS**. If an interaction has been tagged with additional classifications, they will be provided in this column separated by "|". If no tag information is available, this field will contain "-". | - **TAGS**. If an interaction has been tagged with additional classifications, they will be provided in this column separated by "|". If no tag information is available, this field will contain "-". | ||
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| - **EXTERNALS_A**. This field contains a number of external database ids for interactor A in the format DB_NAME:DB_ID|DB_NAME:DB_ID. | - **EXTERNALS_A**. This field contains a number of external database ids for interactor A in the format DB_NAME:DB_ID|DB_NAME:DB_ID. | ||
| - **EXTERNALS_B**. Same as EXTERNALS_A, but for interactor B. | - **EXTERNALS_B**. Same as EXTERNALS_A, but for interactor B. | ||
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| - | [[downloads|Back to BioGRID Download Formats]] | ||