| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 3 | 3 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 3 | 2 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 82,314 | 74,008 | 11,744 | 2,366 |
| GENETIC | 363 | 295 | 323 | 165 |
| COMBINED | 82,677 | 74,210 | 11,791 | 2,448 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 680 | 596 | 608 | 230 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 680 | 596 | 608 | 230 |
| Caenorhabditis elegans | PHYSICAL | 45,567 | 41,075 | 8,992 | 1,539 |
| GENETIC | 2,362 | 2,295 | 1,152 | 39 |
| COMBINED | 47,929 | 43,314 | 9,176 | 1,560 |
| Candida albicans (SC5314) | PHYSICAL | 1,560 | 1,329 | 950 | 174 |
| GENETIC | 531 | 454 | 376 | 39 |
| COMBINED | 2,091 | 1,758 | 1,212 | 192 |
| Canis familiaris | PHYSICAL | 558 | 540 | 530 | 34 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 558 | 540 | 530 | 34 |
| Cavia porcellus | PHYSICAL | 10 | 8 | 14 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 8 | 14 | 8 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 69 | 60 | 83 | 24 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 69 | 60 | 83 | 24 |
| Cricetulus griseus | PHYSICAL | 67 | 64 | 80 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 67 | 64 | 80 | 19 |
| Danio rerio | PHYSICAL | 591 | 547 | 528 | 54 |
| GENETIC | 72 | 66 | 68 | 32 |
| COMBINED | 663 | 609 | 584 | 83 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 81,509 | 68,695 | 11,095 | 4,378 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 96,857 | 77,984 | 11,368 | 8,050 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 4 | 3 | 6 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 6 | 4 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 10 | 10 | 12 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 10 | 12 | 3 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,292 | 2,108 | 1,292 | 39 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,318 | 2,132 | 1,323 | 51 |
| Escherichia coli (K12/W3110) | PHYSICAL | 23,977 | 23,910 | 3,440 | 4 |
| GENETIC | 186,493 | 184,791 | 3,980 | 5 |
| COMBINED | 210,470 | 207,575 | 4,174 | 9 |
| Felis Catus | PHYSICAL | 5 | 1 | 2 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 1 | 2 | 5 |
| Gallus gallus | PHYSICAL | 565 | 481 | 456 | 119 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 578 | 490 | 464 | 128 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 613 | 492 | 493 | 57 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 613 | 492 | 493 | 57 |
| Homo sapiens | PHYSICAL | 1,309,506 | 992,423 | 28,125 | 38,786 |
| GENETIC | 19,183 | 18,680 | 7,497 | 402 |
| COMBINED | 1,328,689 | 1,009,318 | 28,559 | 38,961 |
| Human Herpesvirus 1 | PHYSICAL | 481 | 397 | 324 | 71 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 487 | 402 | 329 | 71 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 16 | 12 | 15 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 12 | 15 | 6 |
| Human Herpesvirus 4 | PHYSICAL | 680 | 544 | 505 | 59 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 680 | 544 | 505 | 59 |
| Human Herpesvirus 5 | PHYSICAL | 202 | 134 | 146 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 202 | 134 | 146 | 41 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 1,035 | 917 | 904 | 51 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,035 | 917 | 904 | 51 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,549 | 1,744 | 1,449 | 406 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,550 | 1,744 | 1,449 | 407 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 91 | 80 | 63 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 80 | 63 | 14 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 673 | 515 | 488 | 43 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 673 | 515 | 488 | 43 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 318 | 307 | 313 | 20 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 318 | 307 | 313 | 20 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 1,133 | 1,061 | 989 | 77 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,133 | 1,061 | 989 | 77 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Murid Herpesvirus 1 | PHYSICAL | 2 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 1 |
| Mus musculus | PHYSICAL | 100,687 | 91,933 | 18,175 | 4,771 |
| GENETIC | 942 | 894 | 837 | 211 |
| COMBINED | 101,629 | 92,737 | 18,312 | 4,919 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Myotis lucifugus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 385 | 340 | 350 | 74 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 385 | 340 | 350 | 74 |
| Oryza sativa (Japonica) | PHYSICAL | 364 | 344 | 328 | 23 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 366 | 346 | 328 | 23 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,552 | 2,511 | 1,232 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,552 | 2,511 | 1,232 | 7 |
| Rattus norvegicus | PHYSICAL | 11,838 | 10,400 | 6,127 | 1,409 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 11,857 | 10,410 | 6,137 | 1,412 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 258,477 | 176,773 | 7,195 | 10,897 |
| GENETIC | 597,008 | 455,633 | 5,981 | 10,500 |
| COMBINED | 855,485 | 613,938 | 7,412 | 17,901 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 19,784 | 14,982 | 3,856 | 1,723 |
| GENETIC | 62,828 | 52,859 | 3,652 | 2,075 |
| COMBINED | 82,612 | 66,642 | 4,759 | 3,024 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 2,533 | 1,960 | 1,554 | 314 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,533 | 1,960 | 1,554 | 314 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 40,941 | 27,218 | 7,068 | 1,370 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 40,941 | 27,218 | 7,068 | 1,370 |
| Simian Immunodeficiency Virus | PHYSICAL | 37 | 18 | 21 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 37 | 18 | 21 | 18 |
| Simian Virus 40 | PHYSICAL | 18 | 8 | 9 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 8 | 9 | 13 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 119 | 106 | 128 | 47 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 119 | 106 | 128 | 47 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 18 | 10 | 13 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 10 | 13 | 6 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 2,454 | 2,059 | 1,583 | 274 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 2,461 | 2,066 | 1,592 | 277 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,908,670 | 1,469,059 | 86,777 | 62,302 |
| GENETIC | 884,617 | 726,243 | 26,625 | 17,945 |
| COMBINED | 2,793,287 | 2,171,000 | 89,636 | 74,562 |