| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 3 | 3 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 3 | 2 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 82,309 | 74,004 | 11,740 | 2,364 |
| GENETIC | 362 | 294 | 322 | 164 |
| COMBINED | 82,671 | 74,205 | 11,787 | 2,445 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 649 | 575 | 595 | 226 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 649 | 575 | 595 | 226 |
| Caenorhabditis elegans | PHYSICAL | 41,432 | 37,770 | 8,668 | 1,519 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 43,780 | 39,997 | 8,869 | 1,539 |
| Candida albicans (SC5314) | PHYSICAL | 1,558 | 1,327 | 948 | 173 |
| GENETIC | 531 | 454 | 376 | 39 |
| COMBINED | 2,089 | 1,756 | 1,210 | 191 |
| Canis familiaris | PHYSICAL | 558 | 540 | 530 | 34 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 558 | 540 | 530 | 34 |
| Cavia porcellus | PHYSICAL | 10 | 8 | 14 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 8 | 14 | 8 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 59 | 53 | 75 | 21 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 59 | 53 | 75 | 21 |
| Cricetulus griseus | PHYSICAL | 67 | 64 | 80 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 67 | 64 | 80 | 19 |
| Danio rerio | PHYSICAL | 506 | 464 | 461 | 50 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 577 | 526 | 517 | 79 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 69,520 | 57,781 | 10,333 | 4,368 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 84,868 | 67,080 | 10,671 | 8,040 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 4 | 3 | 6 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 6 | 4 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 10 | 10 | 12 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 10 | 12 | 3 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,288 | 2,104 | 1,287 | 36 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,314 | 2,128 | 1,318 | 48 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 186,493 | 184,791 | 3,980 | 5 |
| COMBINED | 199,297 | 196,815 | 4,068 | 8 |
| Felis Catus | PHYSICAL | 5 | 1 | 2 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 1 | 2 | 5 |
| Gallus gallus | PHYSICAL | 561 | 478 | 452 | 117 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 574 | 487 | 460 | 126 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 613 | 492 | 493 | 57 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 613 | 492 | 493 | 57 |
| Homo sapiens | PHYSICAL | 1,278,854 | 970,420 | 28,023 | 38,121 |
| GENETIC | 18,966 | 18,476 | 7,441 | 399 |
| COMBINED | 1,297,820 | 987,179 | 28,463 | 38,294 |
| Human Herpesvirus 1 | PHYSICAL | 326 | 250 | 202 | 71 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 332 | 255 | 207 | 71 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 16 | 12 | 15 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 12 | 15 | 6 |
| Human Herpesvirus 4 | PHYSICAL | 680 | 544 | 505 | 59 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 680 | 544 | 505 | 59 |
| Human Herpesvirus 5 | PHYSICAL | 202 | 134 | 146 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 202 | 134 | 146 | 41 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 1,011 | 901 | 890 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,011 | 901 | 890 | 49 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,533 | 1,737 | 1,443 | 401 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,534 | 1,737 | 1,443 | 402 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 91 | 80 | 63 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 80 | 63 | 14 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 660 | 511 | 484 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 660 | 511 | 484 | 41 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 316 | 305 | 310 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 316 | 305 | 310 | 19 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 1,106 | 1,051 | 987 | 64 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,106 | 1,051 | 987 | 64 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Murid Herpesvirus 1 | PHYSICAL | 2 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 1 |
| Mus musculus | PHYSICAL | 100,204 | 91,546 | 18,144 | 4,694 |
| GENETIC | 938 | 890 | 833 | 209 |
| COMBINED | 101,142 | 92,351 | 18,282 | 4,842 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Myotis lucifugus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 385 | 340 | 350 | 74 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 385 | 340 | 350 | 74 |
| Oryza sativa (Japonica) | PHYSICAL | 364 | 344 | 328 | 23 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 366 | 346 | 328 | 23 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,552 | 2,511 | 1,232 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,552 | 2,511 | 1,232 | 7 |
| Rattus norvegicus | PHYSICAL | 10,571 | 9,167 | 5,080 | 1,387 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 10,590 | 9,177 | 5,090 | 1,390 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 252,946 | 172,715 | 7,188 | 10,783 |
| GENETIC | 596,276 | 455,255 | 5,979 | 10,383 |
| COMBINED | 849,222 | 609,756 | 7,405 | 17,718 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 19,221 | 14,637 | 3,844 | 1,691 |
| GENETIC | 62,702 | 52,774 | 3,645 | 2,058 |
| COMBINED | 81,923 | 66,238 | 4,755 | 2,982 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 2,446 | 1,934 | 1,547 | 282 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,446 | 1,934 | 1,547 | 282 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 39,793 | 26,681 | 7,032 | 1,263 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 39,793 | 26,681 | 7,032 | 1,263 |
| Simian Immunodeficiency Virus | PHYSICAL | 37 | 18 | 21 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 37 | 18 | 21 | 18 |
| Simian Virus 40 | PHYSICAL | 18 | 8 | 9 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 8 | 9 | 13 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 116 | 104 | 125 | 45 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 116 | 104 | 125 | 45 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 18 | 10 | 13 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 10 | 13 | 6 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 2,452 | 2,057 | 1,580 | 272 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 2,459 | 2,064 | 1,589 | 275 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,843,877 | 1,416,813 | 84,081 | 61,356 |
| GENETIC | 883,522 | 725,556 | 26,541 | 17,802 |
| COMBINED | 2,727,399 | 2,118,782 | 88,325 | 73,533 |