| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 3 | 3 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 3 | 2 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 82,254 | 73,962 | 11,731 | 2,361 |
| GENETIC | 362 | 294 | 322 | 164 |
| COMBINED | 82,616 | 74,163 | 11,778 | 2,442 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 644 | 573 | 593 | 224 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 644 | 573 | 593 | 224 |
| Caenorhabditis elegans | PHYSICAL | 40,963 | 37,301 | 8,607 | 1,518 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 43,311 | 39,528 | 8,809 | 1,538 |
| Candida albicans (SC5314) | PHYSICAL | 1,558 | 1,327 | 948 | 173 |
| GENETIC | 531 | 454 | 376 | 39 |
| COMBINED | 2,089 | 1,756 | 1,210 | 191 |
| Canis familiaris | PHYSICAL | 149 | 133 | 155 | 32 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 149 | 133 | 155 | 32 |
| Cavia porcellus | PHYSICAL | 10 | 8 | 14 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 8 | 14 | 8 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 52 | 47 | 68 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 52 | 47 | 68 | 19 |
| Cricetulus griseus | PHYSICAL | 66 | 63 | 79 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 66 | 63 | 79 | 18 |
| Danio rerio | PHYSICAL | 506 | 464 | 461 | 50 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 577 | 526 | 517 | 79 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 69,520 | 57,781 | 10,333 | 4,368 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 84,868 | 67,080 | 10,671 | 8,040 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 3 | 3 | 6 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 6 | 3 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 10 | 10 | 12 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 10 | 12 | 3 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,315 | 2,131 | 1,314 | 37 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,341 | 2,155 | 1,345 | 49 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 186,493 | 184,791 | 3,980 | 5 |
| COMBINED | 199,297 | 196,815 | 4,068 | 8 |
| Felis Catus | PHYSICAL | 3 | 1 | 2 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 1 | 2 | 3 |
| Gallus gallus | PHYSICAL | 556 | 473 | 447 | 115 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 569 | 482 | 455 | 124 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 613 | 492 | 493 | 57 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 613 | 492 | 493 | 57 |
| Homo sapiens | PHYSICAL | 1,246,661 | 944,074 | 27,657 | 37,545 |
| GENETIC | 18,060 | 17,593 | 7,063 | 392 |
| COMBINED | 1,264,721 | 960,198 | 28,092 | 37,716 |
| Human Herpesvirus 1 | PHYSICAL | 326 | 250 | 202 | 71 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 332 | 255 | 207 | 71 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 16 | 12 | 15 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 12 | 15 | 6 |
| Human Herpesvirus 4 | PHYSICAL | 680 | 544 | 505 | 59 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 680 | 544 | 505 | 59 |
| Human Herpesvirus 5 | PHYSICAL | 202 | 134 | 146 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 202 | 134 | 146 | 41 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 1,011 | 901 | 890 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,011 | 901 | 890 | 49 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,529 | 1,736 | 1,442 | 400 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,530 | 1,736 | 1,442 | 401 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 91 | 80 | 63 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 80 | 63 | 14 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 660 | 511 | 484 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 660 | 511 | 484 | 41 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 316 | 305 | 310 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 316 | 305 | 310 | 19 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 1,089 | 1,045 | 982 | 53 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,089 | 1,045 | 982 | 53 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Murid Herpesvirus 1 | PHYSICAL | 2 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 1 |
| Mus musculus | PHYSICAL | 98,490 | 89,989 | 17,906 | 4,636 |
| GENETIC | 937 | 889 | 832 | 208 |
| COMBINED | 99,427 | 90,793 | 18,046 | 4,783 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 383 | 339 | 349 | 73 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 383 | 339 | 349 | 73 |
| Oryza sativa (Japonica) | PHYSICAL | 364 | 344 | 328 | 23 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 366 | 346 | 328 | 23 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 10,173 | 8,770 | 4,988 | 1,380 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 10,192 | 8,780 | 4,998 | 1,383 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 213,253 | 145,914 | 7,184 | 10,595 |
| GENETIC | 594,529 | 454,206 | 5,979 | 10,202 |
| COMBINED | 807,782 | 584,077 | 7,402 | 17,431 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 19,229 | 14,648 | 3,844 | 1,689 |
| GENETIC | 62,699 | 52,771 | 3,643 | 2,056 |
| COMBINED | 81,928 | 66,245 | 4,754 | 2,978 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 2,415 | 1,930 | 1,544 | 262 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,415 | 1,930 | 1,544 | 262 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 35,576 | 24,530 | 6,631 | 941 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 35,576 | 24,530 | 6,631 | 941 |
| Simian Immunodeficiency Virus | PHYSICAL | 37 | 18 | 21 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 37 | 18 | 21 | 18 |
| Simian Virus 40 | PHYSICAL | 18 | 8 | 9 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 8 | 9 | 13 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 115 | 104 | 125 | 44 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 115 | 104 | 125 | 44 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 18 | 10 | 13 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 10 | 13 | 6 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 2,328 | 1,935 | 1,522 | 270 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 2,335 | 1,942 | 1,531 | 273 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,769,655 | 1,361,684 | 83,339 | 60,498 |
| GENETIC | 880,865 | 723,620 | 26,160 | 17,614 |
| COMBINED | 2,650,520 | 2,064,135 | 87,581 | 72,573 |