| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 3 | 3 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 3 | 2 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 82,140 | 73,904 | 11,723 | 2,342 |
| GENETIC | 361 | 293 | 322 | 163 |
| COMBINED | 82,501 | 74,105 | 11,770 | 2,423 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 641 | 571 | 591 | 223 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 641 | 571 | 591 | 223 |
| Caenorhabditis elegans | PHYSICAL | 40,962 | 37,300 | 8,607 | 1,517 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 43,310 | 39,527 | 8,809 | 1,537 |
| Candida albicans (SC5314) | PHYSICAL | 1,558 | 1,327 | 948 | 173 |
| GENETIC | 531 | 454 | 376 | 39 |
| COMBINED | 2,089 | 1,756 | 1,210 | 191 |
| Canis familiaris | PHYSICAL | 148 | 133 | 155 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 148 | 133 | 155 | 31 |
| Cavia porcellus | PHYSICAL | 10 | 8 | 14 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 10 | 8 | 14 | 8 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 48 | 44 | 64 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 48 | 44 | 64 | 17 |
| Cricetulus griseus | PHYSICAL | 66 | 63 | 79 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 66 | 63 | 79 | 18 |
| Danio rerio | PHYSICAL | 506 | 464 | 461 | 50 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 577 | 526 | 517 | 79 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 69,520 | 57,781 | 10,333 | 4,368 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 84,868 | 67,080 | 10,671 | 8,040 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 3 | 3 | 6 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 6 | 3 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 9 | 9 | 10 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 9 | 10 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,310 | 2,127 | 1,311 | 34 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,336 | 2,151 | 1,342 | 46 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 186,493 | 184,791 | 3,980 | 5 |
| COMBINED | 199,297 | 196,815 | 4,068 | 8 |
| Felis Catus | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Gallus gallus | PHYSICAL | 553 | 471 | 444 | 113 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 566 | 480 | 452 | 122 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 613 | 492 | 493 | 57 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 613 | 492 | 493 | 57 |
| Homo sapiens | PHYSICAL | 1,231,832 | 932,661 | 27,626 | 37,189 |
| GENETIC | 18,057 | 17,590 | 7,063 | 390 |
| COMBINED | 1,249,889 | 948,796 | 28,066 | 37,358 |
| Human Herpesvirus 1 | PHYSICAL | 325 | 249 | 202 | 70 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 331 | 254 | 207 | 70 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 8 | 6 | 10 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 6 | 10 | 4 |
| Human Herpesvirus 4 | PHYSICAL | 673 | 541 | 503 | 57 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 673 | 541 | 503 | 57 |
| Human Herpesvirus 5 | PHYSICAL | 202 | 134 | 146 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 202 | 134 | 146 | 41 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 1,011 | 901 | 890 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,011 | 901 | 890 | 49 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,528 | 1,735 | 1,441 | 399 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,529 | 1,735 | 1,441 | 400 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 91 | 80 | 63 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 80 | 63 | 14 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 656 | 511 | 484 | 40 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 656 | 511 | 484 | 40 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 316 | 305 | 310 | 19 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 316 | 305 | 310 | 19 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 1,084 | 1,043 | 980 | 48 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,084 | 1,043 | 980 | 48 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Mus musculus | PHYSICAL | 98,321 | 89,843 | 17,888 | 4,609 |
| GENETIC | 934 | 886 | 828 | 207 |
| COMBINED | 99,255 | 90,644 | 18,028 | 4,755 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 383 | 339 | 349 | 73 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 383 | 339 | 349 | 73 |
| Oryza sativa (Japonica) | PHYSICAL | 364 | 344 | 328 | 23 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 366 | 346 | 328 | 23 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 10,145 | 8,748 | 4,977 | 1,374 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 10,164 | 8,758 | 4,987 | 1,377 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 207,956 | 141,720 | 7,142 | 10,486 |
| GENETIC | 593,584 | 453,647 | 5,978 | 10,108 |
| COMBINED | 801,540 | 579,764 | 7,390 | 17,268 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 19,217 | 14,642 | 3,842 | 1,687 |
| GENETIC | 62,699 | 52,771 | 3,643 | 2,056 |
| COMBINED | 81,916 | 66,239 | 4,753 | 2,976 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 2,200 | 1,725 | 1,380 | 253 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,200 | 1,725 | 1,380 | 253 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 33,936 | 23,612 | 6,452 | 790 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33,936 | 23,612 | 6,452 | 790 |
| Simian Immunodeficiency Virus | PHYSICAL | 37 | 18 | 21 | 18 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 37 | 18 | 21 | 18 |
| Simian Virus 40 | PHYSICAL | 15 | 6 | 7 | 11 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 15 | 6 | 7 | 11 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 115 | 104 | 125 | 44 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 115 | 104 | 125 | 44 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 18 | 10 | 13 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 10 | 13 | 6 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 2,324 | 1,932 | 1,522 | 268 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 2,331 | 1,939 | 1,531 | 271 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,749,089 | 1,345,905 | 83,256 | 59,976 |
| GENETIC | 879,913 | 723,054 | 26,155 | 17,516 |
| COMBINED | 2,629,002 | 2,048,245 | 87,534 | 71,994 |