| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 81,453 | 73,290 | 11,542 | 2,321 |
| GENETIC | 351 | 283 | 306 | 155 |
| COMBINED | 81,804 | 73,486 | 11,588 | 2,401 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 630 | 560 | 579 | 218 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 630 | 560 | 579 | 218 |
| Caenorhabditis elegans | PHYSICAL | 40,944 | 37,289 | 8,600 | 1,516 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 43,292 | 39,516 | 8,802 | 1,536 |
| Candida albicans (SC5314) | PHYSICAL | 1,558 | 1,327 | 948 | 173 |
| GENETIC | 530 | 453 | 374 | 38 |
| COMBINED | 2,088 | 1,755 | 1,208 | 190 |
| Canis familiaris | PHYSICAL | 140 | 128 | 148 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 140 | 128 | 148 | 28 |
| Cavia porcellus | PHYSICAL | 9 | 7 | 13 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 7 | 13 | 7 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 42 | 38 | 57 | 16 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 42 | 38 | 57 | 16 |
| Cricetulus griseus | PHYSICAL | 64 | 62 | 78 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 64 | 62 | 78 | 17 |
| Danio rerio | PHYSICAL | 505 | 463 | 459 | 49 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 576 | 525 | 515 | 78 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 69,282 | 57,561 | 10,320 | 4,361 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 84,630 | 66,860 | 10,660 | 8,033 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 9 | 9 | 10 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 9 | 10 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,309 | 2,126 | 1,311 | 33 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,335 | 2,150 | 1,342 | 45 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 184,023 | 181,621 | 4,063 | 7 |
| Felis Catus | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Gallus gallus | PHYSICAL | 545 | 463 | 435 | 109 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 558 | 472 | 443 | 118 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 603 | 488 | 489 | 53 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 603 | 488 | 489 | 53 |
| Homo sapiens | PHYSICAL | 1,117,610 | 844,538 | 27,088 | 35,465 |
| GENETIC | 16,102 | 15,642 | 6,008 | 372 |
| COMBINED | 1,133,712 | 858,893 | 27,497 | 35,622 |
| Human Herpesvirus 1 | PHYSICAL | 299 | 228 | 187 | 61 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 305 | 233 | 192 | 61 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 8 | 6 | 10 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 6 | 10 | 4 |
| Human Herpesvirus 4 | PHYSICAL | 648 | 523 | 491 | 54 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 648 | 523 | 491 | 54 |
| Human Herpesvirus 5 | PHYSICAL | 186 | 125 | 138 | 36 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 186 | 125 | 138 | 36 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 867 | 766 | 781 | 45 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 867 | 766 | 781 | 45 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,512 | 1,729 | 1,437 | 390 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,513 | 1,729 | 1,437 | 391 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 89 | 80 | 63 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 89 | 80 | 63 | 13 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 648 | 506 | 480 | 36 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 648 | 506 | 480 | 36 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 24 | 15 | 19 | 15 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 15 | 19 | 15 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 936 | 890 | 869 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 936 | 890 | 869 | 28 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Mus musculus | PHYSICAL | 90,688 | 82,643 | 17,259 | 4,500 |
| GENETIC | 917 | 872 | 818 | 206 |
| COMBINED | 91,605 | 83,430 | 17,411 | 4,645 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 373 | 330 | 340 | 71 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 373 | 330 | 340 | 71 |
| Oryza sativa (Japonica) | PHYSICAL | 346 | 330 | 314 | 21 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 348 | 332 | 314 | 21 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 5 | 3 | 4 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 4 | 3 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 10,044 | 8,666 | 4,950 | 1,354 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 10,063 | 8,676 | 4,960 | 1,357 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 200,146 | 136,363 | 7,101 | 10,182 |
| GENETIC | 587,636 | 449,367 | 5,971 | 9,827 |
| COMBINED | 787,782 | 570,664 | 7,356 | 16,789 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 18,874 | 14,313 | 3,819 | 1,680 |
| GENETIC | 62,689 | 52,767 | 3,643 | 2,053 |
| COMBINED | 81,563 | 65,912 | 4,740 | 2,967 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 1,702 | 1,407 | 1,134 | 129 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,702 | 1,407 | 1,134 | 129 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 27,085 | 19,226 | 5,293 | 469 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 27,085 | 19,226 | 5,293 | 469 |
| Simian Immunodeficiency Virus | PHYSICAL | 35 | 17 | 20 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 35 | 17 | 20 | 17 |
| Simian Virus 40 | PHYSICAL | 14 | 6 | 7 | 10 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 14 | 6 | 7 | 10 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 112 | 102 | 122 | 41 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 112 | 102 | 122 | 41 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 14 | 9 | 12 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 14 | 9 | 12 | 5 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,942 | 1,576 | 1,344 | 252 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,949 | 1,583 | 1,354 | 255 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,618,446 | 1,244,672 | 82,082 | 57,756 |
| GENETIC | 856,721 | 701,622 | 25,074 | 17,208 |
| COMBINED | 2,475,167 | 1,926,299 | 86,365 | 69,586 |