| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anas platyrhynchos | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 81,453 | 73,290 | 11,542 | 2,321 |
| GENETIC | 351 | 283 | 306 | 155 |
| COMBINED | 81,804 | 73,486 | 11,588 | 2,401 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 630 | 560 | 579 | 218 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 630 | 560 | 579 | 218 |
| Caenorhabditis elegans | PHYSICAL | 36,866 | 33,226 | 8,029 | 1,514 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 39,214 | 35,453 | 8,276 | 1,534 |
| Candida albicans (SC5314) | PHYSICAL | 1,558 | 1,327 | 948 | 173 |
| GENETIC | 529 | 452 | 372 | 37 |
| COMBINED | 2,087 | 1,755 | 1,208 | 189 |
| Canis familiaris | PHYSICAL | 140 | 128 | 148 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 140 | 128 | 148 | 28 |
| Cavia porcellus | PHYSICAL | 8 | 6 | 11 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 6 | 11 | 6 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 42 | 38 | 57 | 16 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 42 | 38 | 57 | 16 |
| Cricetulus griseus | PHYSICAL | 64 | 62 | 78 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 64 | 62 | 78 | 17 |
| Danio rerio | PHYSICAL | 259 | 218 | 217 | 47 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 330 | 280 | 273 | 76 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 79 | 66 | 72 | 11 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 85 | 69 | 76 | 12 |
| Drosophila melanogaster | PHYSICAL | 68,536 | 56,834 | 10,154 | 4,359 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 83,884 | 66,133 | 10,504 | 8,031 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 9 | 9 | 10 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 9 | 10 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,309 | 2,126 | 1,311 | 33 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,335 | 2,150 | 1,342 | 45 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 184,023 | 181,621 | 4,063 | 7 |
| Felis Catus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Gallus gallus | PHYSICAL | 545 | 463 | 435 | 109 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 558 | 472 | 443 | 118 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 603 | 488 | 489 | 53 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 603 | 488 | 489 | 53 |
| Homo sapiens | PHYSICAL | 1,067,695 | 808,614 | 27,035 | 35,002 |
| GENETIC | 11,997 | 11,852 | 5,222 | 370 |
| COMBINED | 1,079,692 | 819,530 | 27,421 | 35,157 |
| Human Herpesvirus 1 | PHYSICAL | 298 | 227 | 186 | 60 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 304 | 232 | 191 | 60 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 5 | 3 | 6 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 6 | 3 |
| Human Herpesvirus 4 | PHYSICAL | 648 | 523 | 491 | 54 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 648 | 523 | 491 | 54 |
| Human Herpesvirus 5 | PHYSICAL | 181 | 122 | 135 | 34 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 181 | 122 | 135 | 34 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 867 | 766 | 781 | 45 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 867 | 766 | 781 | 45 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,264 | 1,506 | 1,251 | 387 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,265 | 1,506 | 1,251 | 388 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 89 | 80 | 63 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 89 | 80 | 63 | 13 |
| Human papillomavirus (10) | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human papillomavirus (16) | PHYSICAL | 648 | 506 | 480 | 36 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 648 | 506 | 480 | 36 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 24 | 15 | 19 | 15 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 15 | 19 | 15 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 363 | 347 | 358 | 24 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 363 | 347 | 358 | 24 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Mus musculus | PHYSICAL | 89,421 | 81,475 | 17,151 | 4,459 |
| GENETIC | 917 | 872 | 818 | 206 |
| COMBINED | 90,338 | 82,262 | 17,304 | 4,604 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 373 | 330 | 340 | 71 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 373 | 330 | 340 | 71 |
| Oryza sativa (Japonica) | PHYSICAL | 346 | 330 | 314 | 21 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 348 | 332 | 314 | 21 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 10,041 | 8,663 | 4,948 | 1,351 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 10,060 | 8,673 | 4,958 | 1,354 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 199,166 | 135,772 | 7,100 | 10,147 |
| GENETIC | 586,475 | 448,438 | 5,969 | 9,781 |
| COMBINED | 785,641 | 569,303 | 7,355 | 16,717 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 18,495 | 14,039 | 3,789 | 1,636 |
| GENETIC | 62,340 | 52,465 | 3,627 | 2,007 |
| COMBINED | 80,835 | 65,357 | 4,735 | 2,888 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 1,659 | 1,375 | 1,110 | 124 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,659 | 1,375 | 1,110 | 124 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 26,722 | 19,013 | 5,202 | 420 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 26,722 | 19,013 | 5,202 | 420 |
| Simian Immunodeficiency Virus | PHYSICAL | 35 | 17 | 20 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 35 | 17 | 20 | 17 |
| Simian Virus 40 | PHYSICAL | 12 | 5 | 6 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 5 | 6 | 8 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 111 | 101 | 120 | 40 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 111 | 101 | 120 | 40 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 12 | 8 | 10 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 8 | 10 | 4 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,942 | 1,576 | 1,344 | 252 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,949 | 1,583 | 1,354 | 255 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,560,966 | 1,201,825 | 80,967 | 57,194 |
| GENETIC | 851,105 | 696,600 | 24,268 | 17,113 |
| COMBINED | 2,412,071 | 1,878,962 | 85,308 | 68,949 |