| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 59,709 | 52,007 | 10,923 | 2,311 |
| GENETIC | 351 | 283 | 306 | 155 |
| COMBINED | 60,060 | 52,203 | 10,970 | 2,391 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 621 | 554 | 570 | 212 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 621 | 554 | 570 | 212 |
| Caenorhabditis elegans | PHYSICAL | 36,863 | 33,224 | 8,029 | 1,512 |
| GENETIC | 2,348 | 2,281 | 1,140 | 37 |
| COMBINED | 39,211 | 35,451 | 8,276 | 1,532 |
| Candida albicans (SC5314) | PHYSICAL | 1,554 | 1,325 | 945 | 171 |
| GENETIC | 527 | 450 | 369 | 35 |
| COMBINED | 2,081 | 1,751 | 1,204 | 185 |
| Canis familiaris | PHYSICAL | 140 | 128 | 148 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 140 | 128 | 148 | 28 |
| Cavia porcellus | PHYSICAL | 8 | 6 | 11 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 6 | 11 | 6 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 24 | 20 | 27 | 11 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 27 | 11 |
| Cricetulus griseus | PHYSICAL | 63 | 61 | 77 | 16 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 63 | 61 | 77 | 16 |
| Danio rerio | PHYSICAL | 254 | 215 | 212 | 44 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 325 | 277 | 268 | 73 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 78 | 65 | 71 | 10 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 84 | 68 | 75 | 11 |
| Drosophila melanogaster | PHYSICAL | 67,587 | 55,893 | 9,285 | 4,353 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 82,935 | 65,192 | 9,636 | 8,025 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 9 | 9 | 10 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 9 | 10 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,304 | 2,122 | 1,308 | 29 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,330 | 2,146 | 1,339 | 41 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 184,023 | 181,621 | 4,063 | 7 |
| Felis Catus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Gallus gallus | PHYSICAL | 522 | 443 | 419 | 104 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 535 | 452 | 427 | 113 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 594 | 484 | 486 | 50 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 594 | 484 | 486 | 50 |
| Homo sapiens | PHYSICAL | 719,767 | 555,957 | 26,011 | 32,504 |
| GENETIC | 11,374 | 11,229 | 5,030 | 362 |
| COMBINED | 731,141 | 566,352 | 26,448 | 32,655 |
| Human Herpesvirus 1 | PHYSICAL | 279 | 213 | 175 | 51 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 285 | 218 | 180 | 51 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 5 | 3 | 6 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 6 | 3 |
| Human Herpesvirus 4 | PHYSICAL | 436 | 327 | 324 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 436 | 327 | 324 | 49 |
| Human Herpesvirus 5 | PHYSICAL | 157 | 111 | 124 | 29 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 157 | 111 | 124 | 29 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 862 | 763 | 778 | 44 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 862 | 763 | 778 | 44 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,077 | 1,347 | 1,151 | 371 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,078 | 1,347 | 1,151 | 372 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 89 | 80 | 63 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 89 | 80 | 63 | 13 |
| Human papillomavirus (10) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Human papillomavirus (16) | PHYSICAL | 644 | 504 | 479 | 33 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 644 | 504 | 479 | 33 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 146 | 132 | 128 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 146 | 132 | 128 | 2 |
| Human papillomavirus (6b) | PHYSICAL | 592 | 581 | 459 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 592 | 581 | 459 | 4 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 24 | 15 | 19 | 15 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 15 | 19 | 15 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 318 | 309 | 325 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 318 | 309 | 325 | 14 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Mus musculus | PHYSICAL | 82,980 | 75,353 | 16,666 | 4,250 |
| GENETIC | 911 | 866 | 810 | 203 |
| COMBINED | 83,891 | 76,134 | 16,835 | 4,393 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 24 | 20 | 25 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 20 | 25 | 7 |
| Neurospora crassa (OR74A) | PHYSICAL | 33 | 32 | 35 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 33 | 32 | 35 | 3 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 369 | 326 | 337 | 69 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 369 | 326 | 337 | 69 |
| Oryza sativa (Japonica) | PHYSICAL | 346 | 330 | 314 | 21 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 348 | 332 | 314 | 21 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 9,600 | 8,264 | 4,830 | 1,290 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 9,619 | 8,274 | 4,840 | 1,293 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 178,492 | 118,905 | 7,080 | 9,755 |
| GENETIC | 579,688 | 443,463 | 5,963 | 9,433 |
| COMBINED | 758,180 | 548,525 | 7,335 | 16,121 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 18,452 | 14,008 | 3,772 | 1,628 |
| GENETIC | 62,313 | 52,449 | 3,627 | 2,003 |
| COMBINED | 80,765 | 65,314 | 4,720 | 2,878 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 1,577 | 1,337 | 1,083 | 108 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,577 | 1,337 | 1,083 | 108 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 20,199 | 15,522 | 4,615 | 162 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 20,199 | 15,522 | 4,615 | 162 |
| Simian Immunodeficiency Virus | PHYSICAL | 35 | 17 | 20 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 35 | 17 | 20 | 17 |
| Simian Virus 40 | PHYSICAL | 12 | 5 | 6 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 5 | 6 | 8 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Sorghum bicolor | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 91 | 85 | 105 | 36 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 91 | 85 | 105 | 36 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 12 | 8 | 10 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 8 | 10 | 4 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,880 | 1,541 | 1,321 | 236 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,887 | 1,548 | 1,331 | 239 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,165,250 | 906,200 | 79,174 | 54,150 |
| GENETIC | 843,662 | 690,980 | 24,061 | 16,750 |
| COMBINED | 2,008,912 | 1,578,886 | 83,582 | 65,694 |