| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 58,520 | 50,852 | 10,751 | 2,308 |
| GENETIC | 351 | 283 | 306 | 155 |
| COMBINED | 58,871 | 51,048 | 10,801 | 2,388 |
| Bacillus subtilis (168) | PHYSICAL | 18 | 11 | 9 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 11 | 9 | 4 |
| Bos taurus | PHYSICAL | 621 | 554 | 570 | 212 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 621 | 554 | 570 | 212 |
| Caenorhabditis elegans | PHYSICAL | 36,863 | 33,224 | 8,029 | 1,512 |
| GENETIC | 2,344 | 2,277 | 1,136 | 36 |
| COMBINED | 39,207 | 35,447 | 8,274 | 1,531 |
| Candida albicans (SC5314) | PHYSICAL | 1,554 | 1,325 | 945 | 171 |
| GENETIC | 527 | 450 | 369 | 35 |
| COMBINED | 2,081 | 1,751 | 1,204 | 185 |
| Canis familiaris | PHYSICAL | 140 | 128 | 148 | 28 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 140 | 128 | 148 | 28 |
| Cavia porcellus | PHYSICAL | 8 | 6 | 11 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 6 | 11 | 6 |
| Chlamydomonas reinhardtii | PHYSICAL | 17 | 16 | 19 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 19 | 4 |
| Chlorocebus sabaeus | PHYSICAL | 21 | 19 | 25 | 10 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 21 | 19 | 25 | 10 |
| Cricetulus griseus | PHYSICAL | 63 | 61 | 77 | 16 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 63 | 61 | 77 | 16 |
| Danio rerio | PHYSICAL | 249 | 211 | 209 | 43 |
| GENETIC | 71 | 65 | 66 | 31 |
| COMBINED | 320 | 273 | 265 | 72 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 78 | 65 | 71 | 10 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 84 | 68 | 75 | 11 |
| Drosophila melanogaster | PHYSICAL | 67,586 | 55,892 | 9,284 | 4,352 |
| GENETIC | 15,348 | 10,764 | 3,294 | 4,640 |
| COMBINED | 82,934 | 65,191 | 9,635 | 8,024 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MC4100/BW2952) | PHYSICAL | 9 | 9 | 10 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 9 | 10 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 2,304 | 2,122 | 1,308 | 29 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 2,330 | 2,146 | 1,339 | 41 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 184,023 | 181,621 | 4,063 | 7 |
| Felis Catus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Gallus gallus | PHYSICAL | 522 | 443 | 419 | 104 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 535 | 452 | 427 | 113 |
| Glycine max | PHYSICAL | 46 | 40 | 45 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 46 | 40 | 45 | 8 |
| Hepatitus C Virus | PHYSICAL | 594 | 484 | 486 | 50 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 594 | 484 | 486 | 50 |
| Homo sapiens | PHYSICAL | 710,026 | 547,929 | 25,974 | 32,270 |
| GENETIC | 11,026 | 10,885 | 4,810 | 357 |
| COMBINED | 721,052 | 558,033 | 26,400 | 32,417 |
| Human Herpesvirus 1 | PHYSICAL | 269 | 208 | 174 | 50 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 275 | 213 | 179 | 50 |
| Human Herpesvirus 2 | PHYSICAL | 12 | 6 | 10 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 6 | 10 | 5 |
| Human Herpesvirus 3 | PHYSICAL | 5 | 3 | 6 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 3 | 6 | 3 |
| Human Herpesvirus 4 | PHYSICAL | 436 | 327 | 324 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 436 | 327 | 324 | 49 |
| Human Herpesvirus 5 | PHYSICAL | 157 | 111 | 124 | 29 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 157 | 111 | 124 | 29 |
| Human Herpesvirus 6A | PHYSICAL | 11 | 8 | 12 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 8 | 12 | 7 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 7 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 8 | PHYSICAL | 862 | 763 | 778 | 44 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 862 | 763 | 778 | 44 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 2,075 | 1,346 | 1,150 | 370 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 2,076 | 1,346 | 1,150 | 371 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 89 | 80 | 63 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 89 | 80 | 63 | 13 |
| Human papillomavirus (10) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Human papillomavirus (16) | PHYSICAL | 359 | 256 | 235 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 359 | 256 | 235 | 31 |
| Human papillomavirus (32) | PHYSICAL | 62 | 58 | 57 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 62 | 58 | 57 | 1 |
| Human papillomavirus (5) | PHYSICAL | 82 | 69 | 67 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 82 | 69 | 67 | 1 |
| Human papillomavirus (6b) | PHYSICAL | 87 | 81 | 80 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 87 | 81 | 80 | 3 |
| Human papillomavirus (7) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human papillomavirus (9) | PHYSICAL | 96 | 87 | 84 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 96 | 87 | 84 | 1 |
| Leishmania major (Friedlin) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Macaca mulatta | PHYSICAL | 24 | 15 | 19 | 15 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 24 | 15 | 19 | 15 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Middle-East Respiratory Syndrome-related Coronavirus | PHYSICAL | 316 | 308 | 324 | 12 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 316 | 308 | 324 | 12 |
| Monodelphis domestica | PHYSICAL | 4 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 2 | 3 | 1 |
| Mus musculus | PHYSICAL | 80,997 | 73,437 | 16,084 | 4,224 |
| GENETIC | 878 | 833 | 782 | 199 |
| COMBINED | 81,875 | 74,187 | 16,246 | 4,363 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 17 | 13 | 17 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 13 | 17 | 6 |
| Neurospora crassa (OR74A) | PHYSICAL | 11 | 10 | 12 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 10 | 12 | 2 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 369 | 326 | 337 | 69 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 369 | 326 | 337 | 69 |
| Oryza sativa (Japonica) | PHYSICAL | 346 | 330 | 314 | 21 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 348 | 332 | 314 | 21 |
| Ovis aries | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Pan troglodytes | PHYSICAL | 49 | 48 | 54 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 49 | 48 | 54 | 6 |
| Pediculus humanus | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,551 | 2,510 | 1,230 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,551 | 2,510 | 1,230 | 6 |
| Rattus norvegicus | PHYSICAL | 8,725 | 7,411 | 4,470 | 1,281 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 8,744 | 7,421 | 4,480 | 1,284 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 176,895 | 117,731 | 7,077 | 9,706 |
| GENETIC | 579,330 | 443,272 | 5,962 | 9,395 |
| COMBINED | 756,225 | 547,245 | 7,332 | 16,046 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 17,529 | 13,109 | 3,571 | 1,624 |
| GENETIC | 62,313 | 52,449 | 3,627 | 2,003 |
| COMBINED | 79,842 | 64,418 | 4,651 | 2,874 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Severe acute respiratory syndrome coronavirus | PHYSICAL | 1,570 | 1,336 | 1,082 | 101 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1,570 | 1,336 | 1,082 | 101 |
| Severe acute respiratory syndrome coronavirus 2 | PHYSICAL | 19,516 | 15,073 | 4,422 | 121 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 19,516 | 15,073 | 4,422 | 121 |
| Simian Immunodeficiency Virus | PHYSICAL | 35 | 17 | 20 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 35 | 17 | 20 | 17 |
| Simian Virus 40 | PHYSICAL | 12 | 5 | 6 | 8 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 5 | 6 | 8 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 3 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 3 | 5 | 3 |
| Streptococcus pneumoniae (ATCCBAA255) | PHYSICAL | 16 | 9 | 6 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 16 | 9 | 6 | 1 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 95 | 89 | 108 | 36 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 95 | 89 | 108 | 36 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 12 | 8 | 10 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 12 | 8 | 10 | 4 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,421 | 1,256 | 1,152 | 233 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,428 | 1,263 | 1,162 | 236 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 1,149,402 | 892,827 | 78,228 | 53,839 |
| GENETIC | 842,919 | 690,408 | 23,808 | 16,703 |
| COMBINED | 1,992,321 | 1,565,084 | 82,751 | 65,349 |