| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 42,638 | 35,903 | 9,572 | 2,280 |
| GENETIC | 350 | 282 | 304 | 154 |
| COMBINED | 42,988 | 36,098 | 9,627 | 2,360 |
| Bacillus subtilis (168) | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Bos taurus | PHYSICAL | 432 | 393 | 422 | 176 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 432 | 393 | 422 | 176 |
| Caenorhabditis elegans | PHYSICAL | 6,349 | 5,804 | 3,280 | 192 |
| GENETIC | 2,336 | 2,269 | 1,130 | 34 |
| COMBINED | 8,685 | 8,050 | 3,953 | 210 |
| Candida albicans (SC5314) | PHYSICAL | 188 | 128 | 139 | 42 |
| GENETIC | 278 | 270 | 274 | 10 |
| COMBINED | 466 | 396 | 391 | 51 |
| Canis familiaris | PHYSICAL | 43 | 32 | 49 | 22 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 43 | 32 | 49 | 22 |
| Cavia porcellus | PHYSICAL | 7 | 5 | 9 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 7 | 5 | 9 | 5 |
| Chlamydomonas reinhardtii | PHYSICAL | 15 | 14 | 16 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 15 | 14 | 16 | 3 |
| Chlorocebus sabaeus | PHYSICAL | 7 | 5 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 7 | 5 | 7 | 3 |
| Cricetulus griseus | PHYSICAL | 20 | 20 | 25 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 20 | 20 | 25 | 6 |
| Danio rerio | PHYSICAL | 218 | 192 | 187 | 35 |
| GENETIC | 70 | 64 | 65 | 30 |
| COMBINED | 288 | 253 | 245 | 64 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 24 | 17 | 20 | 7 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 30 | 20 | 24 | 8 |
| Drosophila melanogaster | PHYSICAL | 54,510 | 46,996 | 8,841 | 2,785 |
| GENETIC | 13,422 | 9,394 | 2,953 | 4,155 |
| COMBINED | 67,932 | 55,257 | 9,182 | 6,196 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12) | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 107 | 104 | 109 | 18 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 133 | 128 | 143 | 30 |
| Escherichia coli (K12/W3110) | PHYSICAL | 12,804 | 12,801 | 2,045 | 3 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 184,023 | 181,621 | 4,063 | 7 |
| Gallus gallus | PHYSICAL | 441 | 373 | 359 | 80 |
| GENETIC | 13 | 10 | 15 | 10 |
| COMBINED | 454 | 382 | 368 | 89 |
| Glycine max | PHYSICAL | 45 | 39 | 43 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 45 | 39 | 43 | 7 |
| Hepatitus C Virus | PHYSICAL | 188 | 129 | 131 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 188 | 129 | 131 | 31 |
| Homo sapiens | PHYSICAL | 427,545 | 314,462 | 21,584 | 26,736 |
| GENETIC | 2,192 | 2,137 | 1,766 | 309 |
| COMBINED | 429,737 | 316,296 | 21,914 | 26,849 |
| Human Herpesvirus 1 | PHYSICAL | 228 | 176 | 163 | 42 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 234 | 181 | 168 | 42 |
| Human Herpesvirus 2 | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human Herpesvirus 3 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 4 | PHYSICAL | 300 | 220 | 225 | 34 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 300 | 220 | 225 | 34 |
| Human Herpesvirus 5 | PHYSICAL | 86 | 64 | 74 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 86 | 64 | 74 | 17 |
| Human Herpesvirus 6A | PHYSICAL | 9 | 6 | 9 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 9 | 6 | 9 | 5 |
| Human Herpesvirus 6B | PHYSICAL | 4 | 4 | 7 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 4 | 7 | 3 |
| Human Herpesvirus 8 | PHYSICAL | 209 | 147 | 145 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 209 | 147 | 145 | 31 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 1,951 | 1,301 | 1,118 | 325 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 1,952 | 1,301 | 1,118 | 326 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 19 | 12 | 16 | 10 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 19 | 12 | 16 | 10 |
| Human papillomavirus (16) | PHYSICAL | 21 | 10 | 11 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 21 | 10 | 11 | 6 |
| Macaca mulatta | PHYSICAL | 22 | 13 | 15 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 22 | 13 | 15 | 13 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Mus musculus | PHYSICAL | 43,722 | 37,780 | 12,760 | 3,704 |
| GENETIC | 368 | 323 | 328 | 188 |
| COMBINED | 44,090 | 38,030 | 12,821 | 3,835 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 11 | 9 | 11 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 9 | 11 | 2 |
| Neurospora crassa (OR74A) | PHYSICAL | 11 | 10 | 12 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 10 | 12 | 2 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 267 | 238 | 249 | 49 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 267 | 238 | 249 | 49 |
| Oryza sativa (Japonica) | PHYSICAL | 106 | 90 | 72 | 18 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 108 | 92 | 72 | 18 |
| Pan troglodytes | PHYSICAL | 5 | 4 | 8 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 4 | 8 | 4 |
| Pediculus humanus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,545 | 2,508 | 1,227 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,545 | 2,508 | 1,227 | 5 |
| Rattus norvegicus | PHYSICAL | 5,915 | 4,948 | 3,549 | 1,048 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 5,934 | 4,958 | 3,559 | 1,051 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 150,520 | 100,464 | 6,407 | 8,709 |
| GENETIC | 549,613 | 424,269 | 5,952 | 8,495 |
| COMBINED | 700,133 | 512,658 | 6,687 | 14,516 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 13,103 | 9,541 | 2,983 | 1,327 |
| GENETIC | 59,030 | 50,001 | 3,375 | 1,546 |
| COMBINED | 72,133 | 58,693 | 4,316 | 2,283 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Simian Immunodeficiency Virus | PHYSICAL | 31 | 16 | 19 | 14 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 31 | 16 | 19 | 14 |
| Simian Virus 40 | PHYSICAL | 8 | 5 | 6 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 8 | 5 | 6 | 4 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 76 | 72 | 89 | 26 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 76 | 72 | 89 | 26 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,352 | 1,198 | 1,099 | 214 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,359 | 1,205 | 1,109 | 217 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 738,096 | 550,938 | 62,926 | 43,800 |
| GENETIC | 798,437 | 658,177 | 19,643 | 14,791 |
| COMBINED | 1,536,533 | 1,193,809 | 67,949 | 54,192 |