| Organism | Experiment Type | Raw Interactions | Non-Redundant Interactions | Unique Genes | Unique Publications |
| Anopheles gambiae (PEST) | PHYSICAL | 2 | 1 | 2 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 1 | 2 | 2 |
| Apis mellifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Arabidopsis thaliana (Columbia) | PHYSICAL | 42,639 | 35,904 | 9,572 | 2,280 |
| GENETIC | 350 | 282 | 304 | 154 |
| COMBINED | 42,989 | 36,099 | 9,627 | 2,360 |
| Bacillus subtilis (168) | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Bos taurus | PHYSICAL | 427 | 388 | 416 | 173 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 427 | 388 | 416 | 173 |
| Caenorhabditis elegans | PHYSICAL | 6,342 | 5,798 | 3,277 | 191 |
| GENETIC | 2,332 | 2,265 | 1,127 | 33 |
| COMBINED | 8,674 | 8,040 | 3,950 | 208 |
| Candida albicans (SC5314) | PHYSICAL | 151 | 118 | 133 | 40 |
| GENETIC | 278 | 270 | 274 | 10 |
| COMBINED | 429 | 386 | 385 | 49 |
| Canis familiaris | PHYSICAL | 43 | 32 | 49 | 22 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 43 | 32 | 49 | 22 |
| Cavia porcellus | PHYSICAL | 7 | 5 | 9 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 7 | 5 | 9 | 5 |
| Chlamydomonas reinhardtii | PHYSICAL | 15 | 14 | 16 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 15 | 14 | 16 | 3 |
| Chlorocebus sabaeus | PHYSICAL | 4 | 3 | 4 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 4 | 1 |
| Cricetulus griseus | PHYSICAL | 20 | 20 | 25 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 20 | 20 | 25 | 6 |
| Danio rerio | PHYSICAL | 218 | 192 | 187 | 35 |
| GENETIC | 70 | 64 | 65 | 30 |
| COMBINED | 288 | 253 | 245 | 64 |
| Dictyostelium discoideum (AX4) | PHYSICAL | 24 | 17 | 20 | 7 |
| GENETIC | 6 | 6 | 8 | 2 |
| COMBINED | 30 | 20 | 24 | 8 |
| Drosophila melanogaster | PHYSICAL | 54,510 | 46,996 | 8,841 | 2,785 |
| GENETIC | 13,422 | 9,394 | 2,953 | 4,155 |
| COMBINED | 67,932 | 55,257 | 9,182 | 6,196 |
| Emericella nidulans (FGSC A4) | PHYSICAL | 65 | 57 | 57 | 3 |
| GENETIC | 6 | 5 | 7 | 3 |
| COMBINED | 71 | 62 | 64 | 6 |
| Equus caballus | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Escherichia coli (K12/MG1655) | PHYSICAL | 105 | 102 | 108 | 17 |
| GENETIC | 26 | 25 | 36 | 12 |
| COMBINED | 131 | 126 | 142 | 29 |
| Escherichia coli (K12/W3110) | PHYSICAL | 6 | 3 | 4 | 2 |
| GENETIC | 171,219 | 169,594 | 3,973 | 4 |
| COMBINED | 171,225 | 169,597 | 3,974 | 6 |
| Gallus gallus | PHYSICAL | 418 | 354 | 344 | 75 |
| GENETIC | 9 | 6 | 10 | 7 |
| COMBINED | 427 | 359 | 351 | 81 |
| Glycine max | PHYSICAL | 45 | 39 | 43 | 7 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 45 | 39 | 43 | 7 |
| Hepatitus C Virus | PHYSICAL | 188 | 129 | 131 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 188 | 129 | 131 | 31 |
| Homo sapiens | PHYSICAL | 417,272 | 306,059 | 21,399 | 26,491 |
| GENETIC | 1,981 | 1,935 | 1,713 | 291 |
| COMBINED | 419,253 | 307,707 | 21,729 | 26,596 |
| Human Herpesvirus 1 | PHYSICAL | 228 | 176 | 163 | 42 |
| GENETIC | 6 | 6 | 7 | 1 |
| COMBINED | 234 | 181 | 168 | 42 |
| Human Herpesvirus 2 | PHYSICAL | 4 | 3 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 4 | 3 | 5 | 3 |
| Human Herpesvirus 3 | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Human Herpesvirus 4 | PHYSICAL | 295 | 217 | 223 | 33 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 295 | 217 | 223 | 33 |
| Human Herpesvirus 5 | PHYSICAL | 86 | 64 | 74 | 17 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 86 | 64 | 74 | 17 |
| Human Herpesvirus 6A | PHYSICAL | 6 | 4 | 6 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 6 | 4 | 6 | 4 |
| Human Herpesvirus 6B | PHYSICAL | 2 | 2 | 4 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 4 | 2 |
| Human Herpesvirus 8 | PHYSICAL | 209 | 147 | 145 | 31 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 209 | 147 | 145 | 31 |
| Human Immunodeficiency Virus 1 | PHYSICAL | 1,944 | 1,298 | 1,116 | 321 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 1,945 | 1,298 | 1,116 | 322 |
| Human Immunodeficiency Virus 2 | PHYSICAL | 19 | 12 | 16 | 10 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 19 | 12 | 16 | 10 |
| Human papillomavirus (16) | PHYSICAL | 21 | 10 | 11 | 6 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 21 | 10 | 11 | 6 |
| Macaca mulatta | PHYSICAL | 22 | 13 | 15 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 22 | 13 | 15 | 13 |
| Meleagris gallopavo | PHYSICAL | 2 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 2 | 1 |
| Mus musculus | PHYSICAL | 39,370 | 34,036 | 12,031 | 3,667 |
| GENETIC | 328 | 286 | 292 | 179 |
| COMBINED | 39,698 | 34,253 | 12,081 | 3,791 |
| Mycobacterium tuberculosis (H37Rv) | PHYSICAL | 11 | 9 | 11 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 9 | 11 | 2 |
| Neurospora crassa (OR74A) | PHYSICAL | 11 | 10 | 12 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 11 | 10 | 12 | 2 |
| Nicotiana tomentosiformis | PHYSICAL | 3 | 2 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 2 | 1 |
| Oryctolagus cuniculus | PHYSICAL | 220 | 191 | 201 | 45 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 220 | 191 | 201 | 45 |
| Oryza sativa (Japonica) | PHYSICAL | 106 | 90 | 72 | 18 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 108 | 92 | 72 | 18 |
| Pan troglodytes | PHYSICAL | 5 | 4 | 8 | 4 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 4 | 8 | 4 |
| Pediculus humanus | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Plasmodium falciparum (3D7) | PHYSICAL | 2,545 | 2,508 | 1,227 | 5 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2,545 | 2,508 | 1,227 | 5 |
| Rattus norvegicus | PHYSICAL | 5,850 | 4,897 | 3,515 | 1,034 |
| GENETIC | 19 | 19 | 31 | 12 |
| COMBINED | 5,869 | 4,907 | 3,525 | 1,037 |
| Ricinus communis | PHYSICAL | 5 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 5 | 2 | 3 | 2 |
| Saccharomyces cerevisiae (S288c) | PHYSICAL | 140,052 | 91,631 | 6,367 | 8,419 |
| GENETIC | 541,220 | 417,838 | 5,950 | 8,205 |
| COMBINED | 681,272 | 497,996 | 6,671 | 14,040 |
| Schizosaccharomyces pombe (972h) | PHYSICAL | 12,673 | 9,350 | 2,952 | 1,250 |
| GENETIC | 57,848 | 49,006 | 3,208 | 1,459 |
| COMBINED | 70,521 | 57,551 | 4,206 | 2,150 |
| Selaginella moellendorffii | PHYSICAL | 8 | 6 | 5 | 1 |
| GENETIC | 2 | 2 | 3 | 1 |
| COMBINED | 10 | 8 | 6 | 1 |
| Simian Immunodeficiency Virus | PHYSICAL | 30 | 15 | 18 | 13 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 30 | 15 | 18 | 13 |
| Simian Virus 40 | PHYSICAL | 6 | 4 | 5 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 6 | 4 | 5 | 3 |
| Solanum lycopersicum | PHYSICAL | 137 | 107 | 44 | 8 |
| GENETIC | 4 | 4 | 4 | 1 |
| COMBINED | 141 | 109 | 45 | 8 |
| Solanum tuberosum | PHYSICAL | 2 | 2 | 3 | 2 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 2 | 2 | 3 | 2 |
| Strongylocentrotus purpuratus | PHYSICAL | 17 | 16 | 17 | 3 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 17 | 16 | 17 | 3 |
| Sus scrofa | PHYSICAL | 76 | 72 | 89 | 26 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 76 | 72 | 89 | 26 |
| Tobacco Mosaic Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Ustilago maydis (521) | PHYSICAL | 3 | 3 | 3 | 3 |
| GENETIC | 1 | 1 | 2 | 1 |
| COMBINED | 4 | 4 | 4 | 4 |
| Vaccinia Virus | PHYSICAL | 3 | 2 | 3 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 3 | 2 | 3 | 1 |
| Vitis vinifera | PHYSICAL | 1 | 1 | 2 | 1 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 1 | 1 | 2 | 1 |
| Xenopus laevis | PHYSICAL | 1,335 | 1,185 | 1,088 | 207 |
| GENETIC | 7 | 7 | 10 | 3 |
| COMBINED | 1,342 | 1,192 | 1,098 | 210 |
| Zea mays | PHYSICAL | 18 | 13 | 21 | 9 |
| GENETIC | 0 | 0 | 0 | 0 |
| COMBINED | 18 | 13 | 21 | 9 |
| All Organisms | PHYSICAL | 699,915 | 517,140 | 60,048 | 43,198 |
| GENETIC | 788,607 | 650,507 | 19,379 | 14,390 |
| COMBINED | 1,488,522 | 1,153,781 | 66,955 | 53,339 |