Build Statistics (3.4.125) - June 2015
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build_3.4.125 [2015/05/26 01:35] biogridadmin |
build_3.4.125 [2015/05/28 23:24] biogridadmin |
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| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 1 | 1 | 2 | 1 | | | ::: | COMBINED | 1 | 1 | 2 | 1 | | ||
| - | | **//Arabidopsis thaliana (Columbia)//** | PHYSICAL | 24978 | 20350 | 7821 | 1576 | | + | | **//Arabidopsis thaliana (Columbia)//** | PHYSICAL | 24,978 | 20,350 | 7,821 | 1,576 | |
| | ::: | GENETIC | 194 | 135 | 116 | 68 | | | ::: | GENETIC | 194 | 135 | 116 | 68 | | ||
| - | | ::: | COMBINED | 25172 | 20463 | 7859 | 1629 | | + | | ::: | COMBINED | 25,172 | 20,463 | 7,859 | 1,629 | |
| | **//Bacillus subtilis (168)//** | PHYSICAL | 2 | 2 | 3 | 2 | | | **//Bacillus subtilis (168)//** | PHYSICAL | 2 | 2 | 3 | 2 | | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| Line 22: | Line 22: | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 402 | 363 | 390 | 154 | | | ::: | COMBINED | 402 | 363 | 390 | 154 | | ||
| - | | **//Caenorhabditis elegans//** | PHYSICAL | 6317 | 5782 | 3269 | 183 | | + | | **//Caenorhabditis elegans//** | PHYSICAL | 6,317 | 5,782 | 3,269 | 183 | |
| - | | ::: | GENETIC | 2324 | 2258 | 1120 | 30 | | + | | ::: | GENETIC | 2,324 | 2,258 | 1,120 | 30 | |
| - | | ::: | COMBINED | 8641 | 8017 | 3941 | 197 | | + | | ::: | COMBINED | 8,641 | 8,017 | 3,941 | 197 | |
| | **//Candida albicans (SC5314)//** | PHYSICAL | 144 | 111 | 125 | 36 | | | **//Candida albicans (SC5314)//** | PHYSICAL | 144 | 111 | 125 | 36 | | ||
| | ::: | GENETIC | 268 | 263 | 266 | 7 | | | ::: | GENETIC | 268 | 263 | 266 | 7 | | ||
| Line 49: | Line 49: | ||
| | ::: | GENETIC | 6 | 6 | 8 | 2 | | | ::: | GENETIC | 6 | 6 | 8 | 2 | | ||
| | ::: | COMBINED | 30 | 20 | 24 | 8 | | | ::: | COMBINED | 30 | 20 | 24 | 8 | | ||
| - | | **//Drosophila melanogaster//** | PHYSICAL | 37754 | 36708 | 8066 | 428 | | + | | **//Drosophila melanogaster//** | PHYSICAL | 37,754 | 36,708 | 8,066 | 428 | |
| - | | ::: | GENETIC | 9980 | 2825 | 1042 | 1483 | | + | | ::: | GENETIC | 9,980 | 2,825 | 1,042 | 1,483 | |
| - | | ::: | COMBINED | 47734 | 39384 | 8214 | 1853 | | + | | ::: | COMBINED | 47,734 | 39,384 | 8,214 | 1,853 | |
| | **//Emericella nidulans (FGSC A4)//** | PHYSICAL | 65 | 57 | 57 | 3 | | | **//Emericella nidulans (FGSC A4)//** | PHYSICAL | 65 | 57 | 57 | 3 | | ||
| | ::: | GENETIC | 6 | 5 | 7 | 3 | | | ::: | GENETIC | 6 | 5 | 7 | 3 | | ||
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| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 164 | 110 | 112 | 24 | | | ::: | COMBINED | 164 | 110 | 112 | 24 | | ||
| - | | **//Homo sapiens//** | PHYSICAL | 256184 | 186744 | 19415 | 24062 | | + | | **//Homo sapiens//** | PHYSICAL | 256,184 | 186,744 | 19,415 | 24,062 | |
| | ::: | GENETIC | 863 | 829 | 870 | 286 | | | ::: | GENETIC | 863 | 829 | 870 | 286 | | ||
| - | | ::: | COMBINED | 257047 | 187318 | 19688 | 24158 | | + | | ::: | COMBINED | 257,047 | 187,318 | 19,688 | 24,158 | |
| | **//Human Herpesvirus 1//** | PHYSICAL | 177 | 134 | 134 | 37 | | | **//Human Herpesvirus 1//** | PHYSICAL | 177 | 134 | 134 | 37 | | ||
| | ::: | GENETIC | 6 | 6 | 7 | 1 | | | ::: | GENETIC | 6 | 6 | 7 | 1 | | ||
| Line 100: | Line 100: | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 191 | 142 | 140 | 25 | | | ::: | COMBINED | 191 | 142 | 140 | 25 | | ||
| - | | **//Human Immunodeficiency Virus 1//** | PHYSICAL | 1785 | 1187 | 1028 | 300 | | + | | **//Human Immunodeficiency Virus 1//** | PHYSICAL | 1,785 | 1,187 | 1,028 | 300 | |
| | ::: | GENETIC | 1 | 1 | 2 | 1 | | | ::: | GENETIC | 1 | 1 | 2 | 1 | | ||
| - | | ::: | COMBINED | 1786 | 1187 | 1028 | 301 | | + | | ::: | COMBINED | 1,786 | 1,187 | 1,028 | 301 | |
| | **//Human Immunodeficiency Virus 2//** | PHYSICAL | 19 | 12 | 16 | 10 | | | **//Human Immunodeficiency Virus 2//** | PHYSICAL | 19 | 12 | 16 | 10 | | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
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| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 2 | 2 | 2 | 1 | | | ::: | COMBINED | 2 | 2 | 2 | 1 | | ||
| - | | **//Mus musculus//** | PHYSICAL | 22300 | 18006 | 8449 | 3334 | | + | | **//Mus musculus//** | PHYSICAL | 22,300 | 18,006 | 8,449 | 3,334 | |
| | ::: | GENETIC | 293 | 252 | 262 | 169 | | | ::: | GENETIC | 293 | 252 | 262 | 169 | | ||
| - | | ::: | COMBINED | 22593 | 18193 | 8505 | 3453 | | + | | ::: | COMBINED | 22,593 | 18,193 | 8,505 | 3,453 | |
| | **//Neurospora crassa (OR74A)//** | PHYSICAL | 11 | 10 | 12 | 2 | | | **//Neurospora crassa (OR74A)//** | PHYSICAL | 11 | 10 | 12 | 2 | | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
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| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 5 | 4 | 8 | 4 | | | ::: | COMBINED | 5 | 4 | 8 | 4 | | ||
| - | | **//Plasmodium falciparum (3D7)//** | PHYSICAL | 2545 | 2508 | 1227 | 5 | | + | | **//Plasmodium falciparum (3D7)//** | PHYSICAL | 2,545 | 2,508 | 1,227 | 5 | |
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| - | | ::: | COMBINED | 2545 | 2508 | 1227 | 5 | | + | | ::: | COMBINED | 2,545 | 2,508 | 1,227 | 5 | |
| - | | **//Rattus norvegicus//** | PHYSICAL | 5327 | 4482 | 3299 | 926 | | + | | **//Rattus norvegicus//** | PHYSICAL | 5,327 | 4,482 | 3,299 | 926 | |
| | ::: | GENETIC | 17 | 17 | 27 | 10 | | | ::: | GENETIC | 17 | 17 | 27 | 10 | | ||
| - | | ::: | COMBINED | 5344 | 4492 | 3309 | 929 | | + | | ::: | COMBINED | 5,344 | 4,492 | 3,309 | 929 | |
| | **//Ricinus communis//** | PHYSICAL | 1 | 1 | 2 | 1 | | | **//Ricinus communis//** | PHYSICAL | 1 | 1 | 2 | 1 | | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 1 | 1 | 2 | 1 | | | ::: | COMBINED | 1 | 1 | 2 | 1 | | ||
| - | | **//Saccharomyces cerevisiae (S288c)//** | PHYSICAL | 133312 | 84332 | 6244 | 7633 | | + | | **//Saccharomyces cerevisiae (S288c)//** | PHYSICAL | 133,312 | 84,332 | 6,244 | 7,633 | |
| - | | ::: | GENETIC | 208868 | 150798 | 5691 | 7463 | | + | | ::: | GENETIC | 208,868 | 150,798 | 5,691 | 7,463 | |
| - | | ::: | COMBINED | 342180 | 228442 | 6478 | 12785 | | + | | ::: | COMBINED | 342,180 | 228,442 | 6,478 | 12,785 | |
| - | | **//Schizosaccharomyces pombe (972h)//** | PHYSICAL | 10054 | 7254 | 2380 | 1201 | | + | | **//Schizosaccharomyces pombe (972h)//** | PHYSICAL | 10,054 | 7,254 | 2,380 | 1,201 | |
| - | | ::: | GENETIC | 57734 | 48923 | 3196 | 1428 | | + | | ::: | GENETIC | 57,734 | 48,923 | 3,196 | 1,428 | |
| - | | ::: | COMBINED | 67788 | 55422 | 3962 | 2084 | | + | | ::: | COMBINED | 67,788 | 55,422 | 3,962 | 2,084 | |
| | **//Simian Immunodeficiency Virus//** | PHYSICAL | 27 | 14 | 17 | 11 | | | **//Simian Immunodeficiency Virus//** | PHYSICAL | 27 | 14 | 17 | 11 | | ||
| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
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| | ::: | GENETIC | 0 | 0 | 0 | 0 | | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| | ::: | COMBINED | 5 | 4 | 6 | 3 | | | ::: | COMBINED | 5 | 4 | 6 | 3 | | ||
| - | | **//All Organisms//** | PHYSICAL | 491068 | 359110 | 53976 | 36841 | | + | | **//All Organisms//** | PHYSICAL | 491,068 | 359,110 | 53,976 | 36,841 | |
| - | | ::: | GENETIC | 280177 | 205942 | 12158 | 10837 | | + | | ::: | GENETIC | 280,177 | 205,942 | 12,158 | 10,837 | |
| - | | ::: | COMBINED | 771245 | 557106 | 56907 | 44483 | | + | | ::: | COMBINED | 771,245 | 557,106 | 56,907 | 44,483 | |
| ===== Chemical Interaction Statistics ===== | ===== Chemical Interaction Statistics ===== | ||
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| | **//Caenorhabditis elegans//** | 8 | 4 | 4 | 2 | 1 | | | **//Caenorhabditis elegans//** | 8 | 4 | 4 | 2 | 1 | | ||
| | **//Candida albicans (SC5314)//** | 108 | 25 | 7 | 50 | 24 | | | **//Candida albicans (SC5314)//** | 108 | 25 | 7 | 50 | 24 | | ||
| - | | **//Escherichia coli (K12/MG1655)//** | 1581 | 826 | 289 | 136 | 582 | | + | | **//Escherichia coli (K12/MG1655)//** | 1,581 | 826 | 289 | 136 | 582 | |
| - | | **//Homo sapiens//** | 25067 | 10365 | 2105 | 8631 | 4358 | | + | | **//Homo sapiens//** | 25,067 | 10,365 | 2,105 | 8,631 | 4,358 | |
| | **//Human Herpesvirus 1//** | 27 | 7 | 2 | 16 | 7 | | | **//Human Herpesvirus 1//** | 27 | 7 | 2 | 16 | 7 | | ||
| | **//Human Herpesvirus 4//** | 10 | 3 | 3 | 6 | 3 | | | **//Human Herpesvirus 4//** | 10 | 3 | 3 | 6 | 3 | | ||
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| | **//Rattus norvegicus//** | 2 | 2 | 1 | 2 | 2 | | | **//Rattus norvegicus//** | 2 | 2 | 1 | 2 | 2 | | ||
| | **//Saccharomyces cerevisiae (S288c)//** | 1 | 1 | 1 | 1 | 1 | | | **//Saccharomyces cerevisiae (S288c)//** | 1 | 1 | 1 | 1 | 1 | | ||
| - | | **//All Organisms//** | 27034 | 11329 | 2464 | 8875 | 4851 | | + | | **//All Organisms//** | 27,034 | 11,329 | 2,464 | 8,875 | 4,851 | |
| ===== Post Translational Modification (PTM) Statistics ===== | ===== Post Translational Modification (PTM) Statistics ===== | ||
| Line 216: | Line 216: | ||
| | ::: | ISG15YLATION | 0 | 7 | 0 | 7 | 6 | | | ::: | ISG15YLATION | 0 | 7 | 0 | 7 | 6 | | ||
| | ::: | NEDDYLATION | 0 | 903 | 0 | 903 | 75 | | | ::: | NEDDYLATION | 0 | 903 | 0 | 903 | 75 | | ||
| - | | ::: | SUMOYLATION | 0 | 2315 | 0 | 2315 | 325 | | + | | ::: | SUMOYLATION | 0 | 2,315 | 0 | 2,315 | 325 | |
| - | | ::: | UBIQUITINATION | 0 | 9993 | 0 | 9993 | 3049 | | + | | ::: | UBIQUITINATION | 0 | 9,993 | 0 | 9,993 | 3,049 | |
| - | | ::: | COMBINED | 0 | 13877 | 0 | 10253 | 3332 | | + | | ::: | COMBINED | 0 | 13,877 | 0 | 10,253 | 3,332 | |
| | **//Human Herpesvirus 1//** | SUMOYLATION | 0 | 1 | 0 | 1 | 1 | | | **//Human Herpesvirus 1//** | SUMOYLATION | 0 | 1 | 0 | 1 | 1 | | ||
| | ::: | UBIQUITINATION | 0 | 3 | 0 | 3 | 4 | | | ::: | UBIQUITINATION | 0 | 3 | 0 | 3 | 4 | | ||
| Line 242: | Line 242: | ||
| | ::: | COMBINED | 0 | 40 | 0 | 38 | 37 | | | ::: | COMBINED | 0 | 40 | 0 | 38 | 37 | | ||
| | **//Saccharomyces cerevisiae (S288c)//** | NEDDYLATION | 0 | 4 | 0 | 4 | 9 | | | **//Saccharomyces cerevisiae (S288c)//** | NEDDYLATION | 0 | 4 | 0 | 4 | 9 | | ||
| - | | ::: | PHOSPHORYLATION | 19981 | 0 | 3165 | 3165 | 528 | | + | | ::: | PHOSPHORYLATION | 19,981 | 0 | 3,165 | 3,165 | 528 | |
| | ::: | SUMOYLATION | 0 | 818 | 0 | 818 | 66 | | | ::: | SUMOYLATION | 0 | 818 | 0 | 818 | 66 | | ||
| - | | ::: | UBIQUITINATION | 0 | 3561 | 0 | 3561 | 212 | | + | | ::: | UBIQUITINATION | 0 | 3,561 | 0 | 3,561 | 212 | |
| - | | ::: | COMBINED | 19981 | 4383 | 3165 | 4443 | 798 | | + | | ::: | COMBINED | 19,981 | 4,383 | 3,165 | 4,443 | 798 | |
| | **//Schizosaccharomyces pombe (972h)//** | UBIQUITINATION | 0 | 4 | 0 | 4 | 3 | | | **//Schizosaccharomyces pombe (972h)//** | UBIQUITINATION | 0 | 4 | 0 | 4 | 3 | | ||
| | ::: | COMBINED | 0 | 4 | 0 | 4 | 3 | | | ::: | COMBINED | 0 | 4 | 0 | 4 | 3 | | ||
| Line 253: | Line 253: | ||
| | ::: | ISG15YLATION | 0 | 7 | 0 | 7 | 6 | | | ::: | ISG15YLATION | 0 | 7 | 0 | 7 | 6 | | ||
| | ::: | NEDDYLATION | 0 | 915 | 0 | 915 | 82 | | | ::: | NEDDYLATION | 0 | 915 | 0 | 915 | 82 | | ||
| - | | ::: | PHOSPHORYLATION | 19981 | 0 | 3165 | 3165 | 528 | | + | | ::: | PHOSPHORYLATION | 19,981 | 0 | 3,165 | 3,165 | 528 | |
| - | | ::: | SUMOYLATION | 0 | 3167 | 0 | 3167 | 405 | | + | | ::: | SUMOYLATION | 0 | 3,167 | 0 | 3,167 | 405 | |
| - | | ::: | UBIQUITINATION | 0 | 13820 | 0 | 13820 | 3444 | | + | | ::: | UBIQUITINATION | 0 | 13,820 | 0 | 13,820 | 3,444 | |
| | ::: | UFMYLATION | 0 | 10 | 0 | 10 | 1 | | | ::: | UFMYLATION | 0 | 10 | 0 | 10 | 1 | | ||
| - | | ::: | COMBINED | 19981 | 18578 | 3165 | 14999 | 4317 | | + | | ::: | COMBINED | 19,981 | 18,578 | 3,165 | 14,999 | 4,317 | |
| + | |||
| + | ===== Complex Statistics ===== | ||
| + | ^ Organism ^ Experiment Type ^ Raw Complexes ^ Non-Redundant Complexes ^ Unique Genes ^ Unique Publications ^ | ||
| + | | **//Arabidopsis thaliana (Columbia)//** | PHYSICAL | 38 | 35 | 156 | 19 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 38 | 35 | 156 | 19 | | ||
| + | | **//Bos taurus//** | PHYSICAL | 9 | 9 | 22 | 3 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 9 | 9 | 22 | 3 | | ||
| + | | **//Caenorhabditis elegans//** | PHYSICAL | 7 | 6 | 16 | 6 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 7 | 6 | 16 | 6 | | ||
| + | | **//Danio rerio//** | PHYSICAL | 1 | 1 | 1 | 1 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 1 | 1 | 1 | 1 | | ||
| + | | **//Drosophila melanogaster//** | PHYSICAL | 24 | 24 | 163 | 17 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 24 | 24 | 163 | 17 | | ||
| + | | **//Emericella nidulans (FGSC A4)//** | PHYSICAL | 4 | 2 | 4 | 1 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 4 | 2 | 4 | 1 | | ||
| + | | **//Gallus gallus//** | PHYSICAL | 6 | 6 | 19 | 4 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 6 | 6 | 19 | 4 | | ||
| + | | **//Homo sapiens//** | PHYSICAL | 886 | 786 | 1,926 | 582 | | ||
| + | | ::: | GENETIC | 2 | 2 | 4 | 2 | | ||
| + | | ::: | COMBINED | 888 | 788 | 1,927 | 584 | | ||
| + | | **//Mus musculus//** | PHYSICAL | 96 | 92 | 233 | 59 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 96 | 92 | 233 | 59 | | ||
| + | | **//Oryctolagus cuniculus//** | PHYSICAL | 7 | 5 | 10 | 4 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 7 | 5 | 10 | 4 | | ||
| + | | **//Rattus norvegicus//** | PHYSICAL | 14 | 14 | 41 | 13 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 14 | 14 | 41 | 13 | | ||
| + | | **//Saccharomyces cerevisiae (S288c)//** | PHYSICAL | 714 | 551 | 1,209 | 416 | | ||
| + | | ::: | GENETIC | 17 | 14 | 37 | 12 | | ||
| + | | ::: | COMBINED | 731 | 565 | 1,243 | 428 | | ||
| + | | **//Schizosaccharomyces pombe (972h)//** | PHYSICAL | 21 | 21 | 93 | 16 | | ||
| + | | ::: | GENETIC | 1 | 1 | 2 | 1 | | ||
| + | | ::: | COMBINED | 22 | 22 | 95 | 17 | | ||
| + | | **//Xenopus laevis//** | PHYSICAL | 12 | 12 | 29 | 8 | | ||
| + | | ::: | GENETIC | 0 | 0 | 0 | 0 | | ||
| + | | ::: | COMBINED | 12 | 12 | 29 | 8 | | ||
| + | | **//All Organisms//** | PHYSICAL | 1,839 | 1,564 | 3,922 | 1,128 | | ||
| + | | ::: | GENETIC | 20 | 17 | 43 | 15 | | ||
| + | | ::: | COMBINED | 1,859 | 1,581 | 3,959 | 1,143 | | ||
| [[statistics|View the Current Database Statistics]] | [[statistics|View the Current Database Statistics]] | ||