BioGRID Plugin 2.0
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biogridplugin2 [2012/01/23 18:48] 127.0.0.1 external edit |
biogridplugin2 [2017/08/08 12:52] (current) |
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| The ‘Create network’ menu option is now a ‘Import into new network’ button and the new ‘Add to network’ button will load additional interaction data into the currently-selected network from the current BioGRID data source, according to the currently-selected filter . | The ‘Create network’ menu option is now a ‘Import into new network’ button and the new ‘Add to network’ button will load additional interaction data into the currently-selected network from the current BioGRID data source, according to the currently-selected filter . | ||
| - | Data can now be imported from the new **[[biogridrest|BioGRID REST service]]**, which is set as the current data source by default, but can be changed under ‘Select Data Source’ . | + | Data can now be imported from the new **[[biogridrest|BioGRID REST service]]**, which is set as the current data source by default, but can be changed under ‘Select Data Source’. |
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| + | ***Due to an upgrade of our main REST service the URL for use use in the Cytoscape plugin must be changed to: | ||
| + | http://sce-bio-c02577.bio.ed.ac.uk:8080/BiogridRestService/resources/interactions*** | ||
| The BioGRID data fields Systematic Name and Official Symbol can now be mapped to Cytoscape node IDs during import, as well as the Entrez Gene ID field. Please note, the latter is the only ID guaranteed to be a unique gene identifier in BioGRID. This setting can be changed under ‘Select Data Source’. | The BioGRID data fields Systematic Name and Official Symbol can now be mapped to Cytoscape node IDs during import, as well as the Entrez Gene ID field. Please note, the latter is the only ID guaranteed to be a unique gene identifier in BioGRID. This setting can be changed under ‘Select Data Source’. | ||
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| The ‘Pie Colors’ options are no longer available. | The ‘Pie Colors’ options are no longer available. | ||
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| + | =====Changes in BiogridPlugin 2.2===== | ||
| + | 1 The new BioGRID REST Web Service can now be used with the BioGRID Plugin. Enter "http://webservice.thebiogrid.org/interactions" under "Import data from">"BioGRID REST Service">"URL". | ||
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| + | 2 Use of the BioGRID REST Web Service now requires an Access Key. You can obtain one by signing up at http://webservice.thebiogrid.org. Enter this in the "Access Key" text field in the plugin. | ||
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| + | 3 The BioGRID REST Web Service no longer contains interactions mapped from IMEx databases. This option has been removed from the BioGRID Plugin filters. | ||
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| + | 4 The BioGRID REST Web Service no longer allows searching on interaction ids. Biogrid Interaction Ids can still be used as a filter option in the BioGRID Plugin if you are using a Biogrid file as the data source. | ||