BioGRID TAB 3.0 Formatted Downloads
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biogrid_tab_version_3.0 [2020/04/29 19:10] biogridadmin |
biogrid_tab_version_3.0 [2020/08/01 02:49] (current) biogridadmin [Interaction File Column Definitions] |
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| - **Experimental System Name**. One of the many [[experimental_systems|Experimental Evidence Codes]] supported by the BioGRID. | - **Experimental System Name**. One of the many [[experimental_systems|Experimental Evidence Codes]] supported by the BioGRID. | ||
| - **Experimental System Type**. This will be either "physical" or "genetic" as a classification of the Experimental System Name. | - **Experimental System Type**. This will be either "physical" or "genetic" as a classification of the Experimental System Name. | ||
| - | - **First author surname** of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) | + | - **Author**. First author surname of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) |
| - **Publication Source** the publication source in which the interaction has been shown. Format is "SOURCE:ID" so for example: PUBMED:12345678 | - **Publication Source** the publication source in which the interaction has been shown. Format is "SOURCE:ID" so for example: PUBMED:12345678 | ||
| - **Organism ID Interactor A**. This is the NCBI Taxonomy ID for Interactor A. | - **Organism ID Interactor A**. This is the NCBI Taxonomy ID for Interactor A. | ||
| - | - **Organism Name Interactor A**. This is the NCBI Taxonomy Name for Interactor A. | ||
| - **Organism ID Interactor B**. Same structure as 16. | - **Organism ID Interactor B**. Same structure as 16. | ||
| - | - **Organism Name Interactor B**. Same structure as 17. | ||
| - **Interaction Throughput**. This will be either High Throughput, Low Throughput or Both (separated by "|"). | - **Interaction Throughput**. This will be either High Throughput, Low Throughput or Both (separated by "|"). | ||
| - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | ||
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| - **Ontology Term Qualifier Names** - If any additional qualifying terms are associated with the terms specified in column 31, those qualifier term names will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 31, in which case, each term will be separated by "^". Example: mutant_type^overexpression|-|activation. Otherwise, this field will contain "-". | - **Ontology Term Qualifier Names** - If any additional qualifying terms are associated with the terms specified in column 31, those qualifier term names will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 31, in which case, each term will be separated by "^". Example: mutant_type^overexpression|-|activation. Otherwise, this field will contain "-". | ||
| - **Ontology Term Types** - In some cases, terms classified as phenotypes may include an additional type. If so, it will be listed here. If multiple terms have types, they will be separated by "|". Example: wildtype|-|wildtype. Otherwise, this field will contain "-". | - **Ontology Term Types** - In some cases, terms classified as phenotypes may include an additional type. If so, it will be listed here. If multiple terms have types, they will be separated by "|". Example: wildtype|-|wildtype. Otherwise, this field will contain "-". | ||
| + | - **Organism Name Interactor A**. This is the Official Organism Name for the Organism ID in 16. | ||
| + | - **Organism Name Interactor B**. This is the Official Organism Name for the Organism ID in 17. | ||
| **All columns are mandatory so columns with no values are filled with "-"** | **All columns are mandatory so columns with no values are filled with "-"** | ||
| [[downloads|Back to BioGRID Download Formats]] | [[downloads|Back to BioGRID Download Formats]] | ||