BioGRID TAB 3.0 Formatted Downloads
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
biogrid_tab_version_3.0 [2020/04/13 00:17] biogridadmin [Interaction File Column Definitions] |
biogrid_tab_version_3.0 [2020/04/13 00:18] biogridadmin [Interaction File Column Definitions] |
||
|---|---|---|---|
| Line 45: | Line 45: | ||
| - **Ontology Term Names** - If any ontology terms are recorded for this interaction, the official ontology term name associated with the Ontology Term ID will be provided here for each mapping, separated by "|". Example: decreased|abnormal|misexpression. Otherwise, this field will contain "-". | - **Ontology Term Names** - If any ontology terms are recorded for this interaction, the official ontology term name associated with the Ontology Term ID will be provided here for each mapping, separated by "|". Example: decreased|abnormal|misexpression. Otherwise, this field will contain "-". | ||
| - **Ontology Term Categories** - If any ontology terms are recorded for this interaction, the official ontology term category will be provided here for each mapping, separated by "|". Example: phenotype|disease|cell line. Otherwise, this field will contain "-". | - **Ontology Term Categories** - If any ontology terms are recorded for this interaction, the official ontology term category will be provided here for each mapping, separated by "|". Example: phenotype|disease|cell line. Otherwise, this field will contain "-". | ||
| - | - **Ontology Term Qualifier IDs** - If any additional qualifying terms are associated with the terms specified in column X, those qualifier term IDs will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column X, in which case, each term will be separated by "^". Example: APO:0000006^APO:0000009|-|APO:0000010. Otherwise, this field will contain "-". | + | - **Ontology Term Qualifier IDs** - If any additional qualifying terms are associated with the terms specified in column 30, those qualifier term IDs will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 30, in which case, each term will be separated by "^". Example: APO:0000006^APO:0000009|-|APO:0000010. Otherwise, this field will contain "-". |
| - | - **Ontology Term Qualifier Names** - If any additional qualifying terms are associated with the terms specified in column Y, those qualifier term names will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column Y, in which case, each term will be separated by "^". Example: mutant_type^overexpression|-|activation. Otherwise, this field will contain "-". | + | - **Ontology Term Qualifier Names** - If any additional qualifying terms are associated with the terms specified in column 31, those qualifier term names will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 31, in which case, each term will be separated by "^". Example: mutant_type^overexpression|-|activation. Otherwise, this field will contain "-". |
| - **Ontology Term Types** - In some cases, terms classified as phenotypes may include an additional type. If so, it will be listed here. If multiple terms have types, they will be separated by "|". Example: wildtype|-|wildtype. Otherwise, this field will contain "-". | - **Ontology Term Types** - In some cases, terms classified as phenotypes may include an additional type. If so, it will be listed here. If multiple terms have types, they will be separated by "|". Example: wildtype|-|wildtype. Otherwise, this field will contain "-". | ||
| - | - **Phenotypes**. If any phenotype info is recorded, it will be provided here separated by "|". Each phenotype will be of the format <phenotype>[<phenotype qualifier>]:<phenotype type>. Note that the phenotype types and qualifiers are optional and will only be present where recorded. Phenotypes may also have multiple qualifiers in which case unique qualifiers will be separated by carat (^). If no phenotype information is available, this field will contain "-". | ||
| **All columns are mandatory so columns with no values are filled with "-"** | **All columns are mandatory so columns with no values are filled with "-"** | ||
| [[downloads|Back to BioGRID Download Formats]] | [[downloads|Back to BioGRID Download Formats]] | ||