BioGRID TAB 3.0 Formatted Downloads
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biogrid_tab_version_3.0 [2020/04/13 00:04] biogridadmin |
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| - **First author surname** of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) | - **First author surname** of the publication in which the interaction has been shown, optionally followed by additional indicators, e.g. Stephenson A (2005) | ||
| - **Publication Source** the publication source in which the interaction has been shown. Format is "SOURCE:ID" so for example: PUBMED:12345678 | - **Publication Source** the publication source in which the interaction has been shown. Format is "SOURCE:ID" so for example: PUBMED:12345678 | ||
| - | - **Organism ID Interactor A**. This is the NCBI Taxonomy ID for Interactor A. | + | - **Organism ID Interactor A**. This is the NCBI Taxonomy ID for Interactor A. |
| + | - **Organism Name Interactor A**. This is the NCBI Taxonomy Name for Interactor A. | ||
| - **Organism ID Interactor B**. Same structure as 16. | - **Organism ID Interactor B**. Same structure as 16. | ||
| + | - **Organism Name Interactor B**. Same structure as 17. | ||
| - **Interaction Throughput**. This will be either High Throughput, Low Throughput or Both (separated by "|"). | - **Interaction Throughput**. This will be either High Throughput, Low Throughput or Both (separated by "|"). | ||
| - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | ||
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| - **TREMBL Accessions Interactor B** - This field will contain one or more matching trembl accessions, separated by "|". If none are available, this field will contain "-". | - **TREMBL Accessions Interactor B** - This field will contain one or more matching trembl accessions, separated by "|". If none are available, this field will contain "-". | ||
| - **REFSEQ Accessions Interactor B** - This field will contain one or more matching refseq accessions, separated by "|". If none are available, this field will contain "-". | - **REFSEQ Accessions Interactor B** - This field will contain one or more matching refseq accessions, separated by "|". If none are available, this field will contain "-". | ||
| - | - **Phenotypes**. If any phenotype info is recorded, it will be provided here separated by "|". Each phenotype will be of the format <phenotype>[<phenotype qualifier>]:<phenotype type>. Note that the phenotype types and qualifiers are optional and will only be present where recorded. Phenotypes may also have multiple qualifiers in which case unique qualifiers will be separated by carat (^). If no phenotype information is available, this field will contain "-". | + | - **Ontology Term IDs** - If any ontology terms are recorded for this interaction, the official ontology term ids will be provided here for each mapping, separated by "|". Example: APO:0000003|APO:0000002|APO:0000007. Otherwise, this field will contain "-". |
| + | - **Ontology Term Names** - If any ontology terms are recorded for this interaction, the official ontology term name associated with the Ontology Term ID will be provided here for each mapping, separated by "|". Example: decreased|abnormal|misexpression. Otherwise, this field will contain "-". | ||
| + | - **Ontology Term Categories** - If any ontology terms are recorded for this interaction, the official ontology term category will be provided here for each mapping, separated by "|". Example: phenotype|disease|cell line. Otherwise, this field will contain "-". | ||
| + | - **Ontology Term Qualifier IDs** - If any additional qualifying terms are associated with the terms specified in column 30, those qualifier term IDs will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 30, in which case, each term will be separated by "^". Example: APO:0000006^APO:0000009|-|APO:0000010. Otherwise, this field will contain "-". | ||
| + | - **Ontology Term Qualifier Names** - If any additional qualifying terms are associated with the terms specified in column 31, those qualifier term names will be specified here, separated by "|". It is possible for more than one qualifying term to be associated with a single term in column 31, in which case, each term will be separated by "^". Example: mutant_type^overexpression|-|activation. Otherwise, this field will contain "-". | ||
| + | - **Ontology Term Types** - In some cases, terms classified as phenotypes may include an additional type. If so, it will be listed here. If multiple terms have types, they will be separated by "|". Example: wildtype|-|wildtype. Otherwise, this field will contain "-". | ||
| **All columns are mandatory so columns with no values are filled with "-"** | **All columns are mandatory so columns with no values are filled with "-"** | ||
| [[downloads|Back to BioGRID Download Formats]] | [[downloads|Back to BioGRID Download Formats]] | ||