A Human Map Kinase Interactome (2010)
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
bandyopadhyay2010 [2010/09/09 17:34] biogridadmin |
bandyopadhyay2010 [2017/08/08 12:52] (current) |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| ====== A Human Map Kinase Interactome (2010) ====== | ====== A Human Map Kinase Interactome (2010) ====== | ||
| - | **Title:** A Human Map Kinase Interactome | + | **Title:** A Human Map Kinase Interactome - Nature Methods (2010) |
| **Authors:** Sourav Bandyopadhyay, Chih-yuan Chiang, Jyoti Srivastava, Merril Gersten, Suhaila White, Russell Bell, Cornelia Kurschner,Christopher H Martin, Mike Smoot, Sudhir Sahasrabudhe, Diane L Barber, Sumit K Chanda & Trey Ideker | **Authors:** Sourav Bandyopadhyay, Chih-yuan Chiang, Jyoti Srivastava, Merril Gersten, Suhaila White, Russell Bell, Cornelia Kurschner,Christopher H Martin, Mike Smoot, Sudhir Sahasrabudhe, Diane L Barber, Sumit K Chanda & Trey Ideker | ||
| Line 7: | Line 7: | ||
| **Abstract:** Mitogen-activated protein kinase (MAPK) pathways form the backbone of signal transduction in the mammalian cell. Here we applied a systematic experimental and computational approach to map 2,269 interactions between human MAPK-related proteins and other cellular machinery, and to assemble these data into functional modules. Multiple lines of evidence including conservation with yeast supported a core network of 641 interactions. Using small interfering RNA knockdowns, we observed that a large fraction of previously unidentified interactors modulated MAPK-mediated signaling. We uncovered the Na-H exchanger NHE1 as a potential MAPK scaffold, suggest links between HSP90 chaperones and MAPK pathways, and identified MUC12 as the human analog to the yeast signaling mucin Msb2. This study makes available a large resource of MAPK interactions and clone libraries, and it illustrates a methodology for probing signaling networks based on functional refinement of experimentally derived protein-interaction maps. | **Abstract:** Mitogen-activated protein kinase (MAPK) pathways form the backbone of signal transduction in the mammalian cell. Here we applied a systematic experimental and computational approach to map 2,269 interactions between human MAPK-related proteins and other cellular machinery, and to assemble these data into functional modules. Multiple lines of evidence including conservation with yeast supported a core network of 641 interactions. Using small interfering RNA knockdowns, we observed that a large fraction of previously unidentified interactors modulated MAPK-mediated signaling. We uncovered the Na-H exchanger NHE1 as a potential MAPK scaffold, suggest links between HSP90 chaperones and MAPK pathways, and identified MUC12 as the human analog to the yeast signaling mucin Msb2. This study makes available a large resource of MAPK interactions and clone libraries, and it illustrates a methodology for probing signaling networks based on functional refinement of experimentally derived protein-interaction maps. | ||
| - | **Downloads (641 Interactions):** Downloadable Files Will Go Here | + | **Downloads (641 Interactions):** [[http://thebiogrid.org/downloads/archives/Published%20Datasets/Bandyopadhyay2010/Bandyopadhyay2010.xls.zip|Microsoft Excel Format (XLS)]], [[http://thebiogrid.org/downloads/archives/Published%20Datasets/Bandyopadhyay2010/Bandyopadhyay2010.tab.zip|Tab-Delimited Text File]] |