Differences

This shows you the differences between two versions of the page.

--- tools [2018/10/08 21:21]
biogridadmin [Partner Resources]
+++ tools [2023/11/14 23:51] (current)
biogridadmin [Online Tools and Resources]
@@ Line 1: / Line 1: @@
 ======Online Tools and Resources======
-Listed on this page are tools, software, and resources either written by the BioGRID team or a third party that can help you make use of BioGRID interaction data. All tools and resources are released **WITHOUT ANY WARRANTY** and are free to both academic and commercial entities for research purposes only. If you know of a useful software tool that should be in this listing, let us know at **[[biogridadmin@gmail.com]]**.
+Listed on this page are tools, software, and resources either written by the BioGRID team or a third party that can help you make use of BioGRID interaction data. All tools and resources are released **WITHOUT ANY WARRANTY** and are free to both academic and commercial entities for research purposes only. If you know of a useful software tool that should be in this listing, let us know at **[[support@thebiogrid.org]]**.
 ===== Partner Resources =====
+  * **[[https://orcs.thebiogrid.org|BioGRID ORCS]]** - The BioGRID Open Respository of CRISPR Screens (ORCS) is a publicly accessible repository of CRISPR screens compiled through comprehensive curation efforts.
   * **[[https://phosphogrid.org|PhosphoGRID]]** - PhosphoGRID records the positions of more than 5000 specific phosphorylated residues on 1495 gene products in Saccharomyces cerevisiae. Each site is documented with a hierarchy of experimental evidence codes.
   * **[[https://yeastkinome.org|Yeast Kinome]]** - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource.
@@ Line 7: / Line 8: @@
   * **[[http://wodaklab.org/iRefWeb|iRefWeb]]** - The iRefWeb interface groups interaction records from the different databases into a single non-redundant view.
-===== Network Visualization =====
+===== Visualization =====
   * **[[https://osprey.thebiogrid.org|Osprey: Network Visualization System]]** - Osprey is a software platform for the visualization of complex interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interaction data maintained by the BioGRID.
   * **[[http://www.cytoscape.org/|Cytoscape]]** - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles.
+  * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.
+  * **[[https://prohits-viz.org/|Prohits-Viz]]** - A suite of webtools for analyzing and visualizing screens and protein-protein interaction data
   * **[[http://genemania.org|GeneMANIA]]** - GeneMANIA finds genes that are related to a set of input genes, using a very large set of functional association data.
   * **[[http://www.esyn.org|esyN]]** - esyN displays online interaction networks integrated with major databases so you can retrieve data automatically as you construct the network.
-  * **[[http://www.ndexbio.org/#/user/0edf268f-df15-11e4-951c-000c29cb28fb|NDex]]** - The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.
 ===== Data Management =====
   * **[[http://prohitsms.com/|ProHits]]** - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions.
@@ Line 22: / Line 24: @@
 ===== Web Services =====
   * **[[biogridrest|BioGRID REST Service]]** - BioGRID interaction data is now available programatically over HTTP through a REST-style web service.
+  * **[[https://orcsws.thebiogrid.org/|BioGRID ORCS Web Service]]** - BioGRID ORCS CRISPR screen data is available programmatically over HTTP through a REST-style web service.
   * **[[http://code.google.com/p/psicquic/|PSICQUIC]]** - PSICQUIC is a web service that attempts to standardize access to molecular interaction databases programatically.
+  * **[[https://gene-info.org/|Gene Info eXtension (GIX)]]** - GIX is a browser extension that allows you to retrieve information about a gene product directly on any webpage simply by double clicking an official gene name, synonym or supported accession.
+  * **[[http://www.pathwaycommons.org/|Pathway Commons]]** - Access and discover data integrated from public pathway and interactions databases.