Online Tools and Resources

Listed on this page are tools, software, and related resources either written by the BioGRID team or a third party that can help you make use of BioGRID ORCS CRISPR Screen Data. If you know of a useful software tool that should be in this listing, let us know at biogridadmin@gmail.com.

• BioGRID - The BioGRID is an interaction repository with data compiled through comprehensive curation efforts.
• Yeast Kinome - Saccharomyces cerevisiae Kinase and Phosphatase Interactome (KPI) Resource.
• ProHits - Prohits is a laboratory information management system for processing large scale mass spectrometry experiments. Prohits is closely integrated with the BioGRID providing real-time comparisons between experimental results and published interactions.
• BioGRID ORCS Web Service - BioGRID ORCS CRISPR screen data is available programmatically over HTTP through a REST-style web service.
• Gene Info eXtension (GIX) - GIX is a browser extension that allows you to retrieve information about a gene product directly on any webpage simply by double clicking an official gene name, synonym or supported accession.

• Addgene - Addgene is a global, nonprofit repository that was created to help scientists share plasmids.
  • Their informative e-book on the basics of CRISPR, CRISPR 101, can be found here.
  • Check out their blog post with an introductory overview to BioGRID ORCS https://blog.addgene.org/the-open-repository-of-crispr-screens.
• Synthego - Synthego is a company that provides support and products for every step of the genome engineering process.
• Awesome-CRISPR - Regularly updated list of software/websites/databases/papers for genome engineering, including (but not limited to) guide design, genome editing outcome, screening analysis, etc.
• ScreenHCA - A python script to cluster CRISPR screens from the BioGRID ORCS database using hierarchical clustering.