Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
orcs:example_searches [2020/07/22 02:53]
biogridadmin
orcs:example_searches [2020/08/07 21:29]
biogridadmin
Line 12: Line 12:
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=CAS9&​organism=all|CAS9]]** - Search for screens using the enzyme "​CAS9"​   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=CAS9&​organism=all|CAS9]]** - Search for screens using the enzyme "​CAS9"​
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=etoposide%2C+bleomycin&​organism=all|Etoposide,​Bleomycin]]** - Search for screens involving the chemotherapy medication "​Etoposide"​ or the cancer medication "​Bleomycin"​   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=etoposide%2C+bleomycin&​organism=all|Etoposide,​Bleomycin]]** - Search for screens involving the chemotherapy medication "​Etoposide"​ or the cancer medication "​Bleomycin"​
-  * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=viability&​organism=all|viability]]** - Search for screens with the phenotype "viability"+  * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=cell proliferation&​organism=all|cell proliferation]]** - Search for screens with the phenotype "cell proliferation"
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=MAGECK%7CEDGER&​organism=all|MAGeCK,​EdgeR]]** - Search for screens using the "​Mageck"​ or "​EdgeR"​ analysis method   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=MAGECK%7CEDGER&​organism=all|MAGeCK,​EdgeR]]** - Search for screens using the "​Mageck"​ or "​EdgeR"​ analysis method
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=Gecko&​organism=all|Gecko]]** - Search for screens using the "​Gecko"​ CRISPR library   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=Gecko&​organism=all|Gecko]]** - Search for screens using the "​Gecko"​ CRISPR library
Line 18: Line 18:
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=A549%2CA2780&​organism=all|A549,​A2780]]** - Search for screens in "​A549"​ or "​A2780"​ cells   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=A549%2CA2780&​organism=all|A549,​A2780]]** - Search for screens in "​A549"​ or "​A2780"​ cells
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=Toxin+Exposure&​organism=all|Toxin Exposure]]** - Search for "Toxin Exposure"​ experiment screens   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=Toxin+Exposure&​organism=all|Toxin Exposure]]** - Search for "Toxin Exposure"​ experiment screens
-  * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=Positive+Selection&​organism=all|Positive Selection]]** - Search for "​Positive Selection"​ screen types 
   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=virus&​organism=all|Virus]]** - Search for screen'​s containing the word "​Virus"​   * **[[https://​orcs.thebiogrid.org/​Search?​searchType=key&​search=virus&​organism=all|Virus]]** - Search for screen'​s containing the word "​Virus"​
  
Line 39: Line 38:
   * **By Cell Type** - Search by cell types such as "acute myeloid leukemia"​ or "​breast cancer"​   * **By Cell Type** - Search by cell types such as "acute myeloid leukemia"​ or "​breast cancer"​
   * **By Cell Line** - Search by cell line such as "​HEK-293"​ or "​CAMA-1"​   * **By Cell Line** - Search by cell line such as "​HEK-293"​ or "​CAMA-1"​
-  * **By Screen Type** - Search by screen type such as "​Positive selection"​ or "​Negative selection"​ 
   * **By Experiment** - Search by experiment such as "​Timecourse"​ or "Toxin Exposure"​   * **By Experiment** - Search by experiment such as "​Timecourse"​ or "Toxin Exposure"​
   * **By Library Type** - Search by library type such as "​CRISPRa"​ or "​CRISPRn"​   * **By Library Type** - Search by library type such as "​CRISPRa"​ or "​CRISPRn"​
   * **By Enzyme** - Search by enzyme such as "​CAS9"​ or "​SunCAS9"​   * **By Enzyme** - Search by enzyme such as "​CAS9"​ or "​SunCAS9"​
   * **By Condition/​Drug** - Search by condition/​drug such as "​Virus:​ Ebola" or "​Methotrexate"​   * **By Condition/​Drug** - Search by condition/​drug such as "​Virus:​ Ebola" or "​Methotrexate"​
-  * **By Phenotype** - Search by phenotype such as "Viability" or "Resistance ​to Virus"+  * **By Phenotype** - Search by phenotype such as "autophagy" or "Response ​to Virus"
   * **By Library Name** - Search by Library name such as "​Gecko"​ or "​TKO"​   * **By Library Name** - Search by Library name such as "​Gecko"​ or "​TKO"​
   * **By Format** - Search by format such as "​Pool"​   * **By Format** - Search by format such as "​Pool"​
   * **By Analysis** - Search by Analysis Method such as "​MaGeCK",​ "​RANKS",​ or "​STARS"​   * **By Analysis** - Search by Analysis Method such as "​MaGeCK",​ "​RANKS",​ or "​STARS"​
-  * **By Throughput** - Search by throughput such as "High throughput"​ or "Low throughput"​ 
   * **By Methodology** - Search by methodology such as "​Activation"​ or "​Knockout"​   * **By Methodology** - Search by methodology such as "​Activation"​ or "​Knockout"​
  
 
orcs/example_searches.txt · Last modified: 2020/08/07 21:29 by biogridadmin