CRISPR Screen Metadata
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orcs:curation_guide:metadata_terms [2019/06/27 09:09] jenn |
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| - | ===== Manually Curated Fields ===== | + | ======= Manually Curated Fields ======= |
| Many of the manually curated fields in ORCS use controlled vocabularies developed by curators after a survey of the literature. These vocabularies are provided below. | Many of the manually curated fields in ORCS use controlled vocabularies developed by curators after a survey of the literature. These vocabularies are provided below. | ||
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| ^ Cell Line/Type | Ontology terms from BTO (first choice), EFO (second choice) or CLO (third choice).Additional guidelines for this curation can be [[orcs:cell_line_guidelines|found here]].| | ^ Cell Line/Type | Ontology terms from BTO (first choice), EFO (second choice) or CLO (third choice).Additional guidelines for this curation can be [[orcs:cell_line_guidelines|found here]].| | ||
| ^ Phenotype | Ontology terms from APO, CMPO or Controlled Vocabulary as needed. Terms currently in use in ORCS can be [[orcs:phenotype_terms|found here]]. | | ^ Phenotype | Ontology terms from APO, CMPO or Controlled Vocabulary as needed. Terms currently in use in ORCS can be [[orcs:phenotype_terms|found here]]. | | ||
| - | ^ Analysis Method | [[orcs:controlled_vocabulary5|Controlled vocabulary]] terms generated by survey of the literature. Can easily be modified as new analysis methods are developed. | | + | ^ Analysis Method | [[orcs:controlled_vocabulary6|Controlled vocabulary]] terms generated by survey of the literature. Can easily be modified as new analysis methods are developed. | |
| ^ Significance Threshold |If provided by the authors a numeric significance threshold can be applied to any score column entered for a screen. Alternatively if only a list of hits was published the curator can mark the screen data as "all significant" or if a yes/no hit vaue was used the author can specify a boolean column. | | ^ Significance Threshold |If provided by the authors a numeric significance threshold can be applied to any score column entered for a screen. Alternatively if only a list of hits was published the curator can mark the screen data as "all significant" or if a yes/no hit vaue was used the author can specify a boolean column. | | ||
| [[:orcs:curation_guide|Back to ORCS Curation Guide]] | [[:orcs:curation_guide|Back to ORCS Curation Guide]] | ||