Adding Screen Data Files
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orcs:curation_guide:adding_screen_data_files [2019/06/26 09:15] jenn [Adding Screen Data Files] |
orcs:curation_guide:adding_screen_data_files [2019/10/03 13:30] jenn [Adding Screen Data Files] |
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| ====== Adding Screen Data Files ====== | ====== Adding Screen Data Files ====== | ||
| - | Screen data files, unlinke supplementary data files which should be unmodified versions of files released with publication and can be any format, should be modified for formatting as described below and can only be added one at a time. | + | Screen data files, unlike supplementary data files which should be unmodified versions of files released with publication and can be any format, should be modified for formatting as described below and can only be added one at a time. |
| * First click on the relevant dataset. Under the abstract will be two buttons: “Add Data File” and “Add Supplementary File”. Use the “Add Data File” to upload a properly formatted .cvs file (only one, if you need to upload other files for additional screens you will have to load them separately). A properly formatted file should have column headers as the first row in the excel sheet | * First click on the relevant dataset. Under the abstract will be two buttons: “Add Data File” and “Add Supplementary File”. Use the “Add Data File” to upload a properly formatted .cvs file (only one, if you need to upload other files for additional screens you will have to load them separately). A properly formatted file should have column headers as the first row in the excel sheet | ||
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| * The file will be sent to the processing queue. If there are errors such as ambiguous and/or unknown genes you will get a yellow error message and a report listing which identifiers have errors.. Map any you can based on additional information in the file (sometimes additional gene aliases or identifiers are provided). For any genes that can be clearly ID’d you will have to fix the gene ID in the cvs file and then re-upload it. | * The file will be sent to the processing queue. If there are errors such as ambiguous and/or unknown genes you will get a yellow error message and a report listing which identifiers have errors.. Map any you can based on additional information in the file (sometimes additional gene aliases or identifiers are provided). For any genes that can be clearly ID’d you will have to fix the gene ID in the cvs file and then re-upload it. | ||
| * Once all genes that can be clearly ID’d have been updated you can upload the revised file, hit “submit screen” to send the file back to the processing queue. If any genes are still unmapped or ambiguous you will again see the yellow error message but can hit the retry button (a circular arrow) to submit the screen (if you see a red error message this indicates the file has an issue that will prevent it from being uploaded and the retry button will not be available). | * Once all genes that can be clearly ID’d have been updated you can upload the revised file, hit “submit screen” to send the file back to the processing queue. If any genes are still unmapped or ambiguous you will again see the yellow error message but can hit the retry button (a circular arrow) to submit the screen (if you see a red error message this indicates the file has an issue that will prevent it from being uploaded and the retry button will not be available). | ||
| - | * Once the screen has a “Completed” status in the processing queue it has been added to CUP and can now be edited to have the relevant metadata curated. | + | * Once the screen has a “Completed” status in the processing queue it has been added to C-UP and can now be edited to have the relevant metadata curated. |
| ===== A Brief Tutorial on the Processing Queue ===== | ===== A Brief Tutorial on the Processing Queue ===== | ||