| Term | Description | Reference |
| BAGEL | Bayesian Analysis of Gene EssentiaLity. | PMID:27083490 |
| CasTLE | Cas9 high-Throughput maximum Likelihood Estimator. | PMID:27159373 |
| CERES | Computational method for decoupling the gene-knockout effect from the copy number effect. | PMID:29083409 |
| edgeR | Empirical Analysis of DGE in R (DGE: Digital Gene Expression). | PMID:19910308 |
| MAGeCK | Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout. | PMID:25476604 |
| RANKS | Robust Analytics and Normalization for Knockout Screens. | PMID:29038160 |
| STARS | Statistical significance for genomewide studies. | PMID:26780180 |
| Log2 | Logarithmic fold change with base 2. | PMID:26472758 |
| DeSeq/DeSeq2 | Differential gene expression analysis based on the negative binomial distribution. | PMID:25516281 |
| DrugZ | Algorithm for identifying chemogenetic interactions in CRISPR screens. | BioRXiv |
| RIGER | RNAi gene enrichment ranking. | PMID:19091943 |
| RSA | Redundant siRNA Activity analysis. | PMID:17828270 |
| Encore | Easy NGS-to-Gene CRISPR REsults | PMID:29178829 |