======= Analytical Methods =======


^  Term  ^ Description       ^ Reference ^
^  BAGEL  | Bayesian Analysis of Gene EssentiaLity. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=27083490|PMID:27083490]]|
^  CasTLE  | Cas9 high-Throughput maximum Likelihood Estimator. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=27159373|PMID:27159373]]|
^  CERES  | Computational method for decoupling the gene-knockout effect from the copy number effect. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29083409|PMID:29083409]]| 
^  edgeR  | Empirical Analysis of DGE in R (DGE: Digital Gene Expression). |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=19910308|PMID:19910308]]|
^  MAGeCK  | Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=25476604|PMID:25476604]]|
^  RANKS  | Robust Analytics and Normalization for Knockout Screens. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29038160|PMID:29038160]]|
^  STARS  | Statistical significance for genomewide studies.|[[https://www.ncbi.nlm.nih.gov/pubmed/?term=26780180|PMID:26780180]]|
^  Log2  | Logarithmic fold change with base 2. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=26472758|PMID:26472758]]|
^  DeSeq/DeSeq2 |Differential gene expression analysis based on the negative binomial distribution. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=25516281|PMID:25516281]]|
^  DrugZ  |Algorithm for identifying chemogenetic interactions in CRISPR screens. |[[https://doi.org/10.1101/232736|BioRXiv]]|
^  RIGER  |RNAi gene enrichment ranking. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=19091943|PMID:19091943]]|
^  RSA   |Redundant siRNA Activity analysis. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=17828270|PMID:17828270]]|
^  Encore  |Easy NGS-to-Gene CRISPR REsults |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29178829|PMID:29178829]]|

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