Analytical Methods
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orcs:controlled_vocabulary6 [2019/06/27 11:43] jenn created |
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| ^ Term ^ Description ^ Reference ^ | ^ Term ^ Description ^ Reference ^ | ||
| - | ^ BAGEL | Bayesian Analysis of Gene EssentiaLity. |27083490| | + | ^ BAGEL | Bayesian Analysis of Gene EssentiaLity. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=27083490|PMID:27083490]]| |
| - | ^ CasTLE | Cas9 high-Throughput maximum Likelihood Estimator. |27159373| | + | ^ CasTLE | Cas9 high-Throughput maximum Likelihood Estimator. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=27159373|PMID:27159373]]| |
| - | ^ CERES | Computational method for decoupling the gene-knockout effect from the copy number effect. |29083409| | + | ^ CERES | Computational method for decoupling the gene-knockout effect from the copy number effect. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29083409|PMID:29083409]]| |
| - | ^ edgeR | Empirical Analysis of DGE in R (DGE: Digital Gene Expression). |19910308| | + | ^ edgeR | Empirical Analysis of DGE in R (DGE: Digital Gene Expression). |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=19910308|PMID:19910308]]| |
| - | ^ MAGeCK | Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout. |25476604| | + | ^ MAGeCK | Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=25476604|PMID:25476604]]| |
| - | ^ RANKS | Robust Analytics and Normalization for Knockout Screens. |29038160| | + | ^ RANKS | Robust Analytics and Normalization for Knockout Screens. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29038160|PMID:29038160]]| |
| - | ^ STARS | Statistical significance for genomewide studies.|26780180 | | + | ^ STARS | Statistical significance for genomewide studies.|[[https://www.ncbi.nlm.nih.gov/pubmed/?term=26780180|PMID:26780180]]| |
| - | ^ Log2 | Logarithmic fold change with base 2. |26472758| | + | ^ Log2 | Logarithmic fold change with base 2. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=26472758|PMID:26472758]]| |
| - | ^ DeSeq/DeSeq2 |Differential gene expression analysis based on the negative binomial distribution. |25516281| | + | ^ DeSeq/DeSeq2 |Differential gene expression analysis based on the negative binomial distribution. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=25516281|PMID:25516281]]| |
| ^ DrugZ |Algorithm for identifying chemogenetic interactions in CRISPR screens. |[[https://doi.org/10.1101/232736|BioRXiv]]| | ^ DrugZ |Algorithm for identifying chemogenetic interactions in CRISPR screens. |[[https://doi.org/10.1101/232736|BioRXiv]]| | ||
| - | ^ RIGER |RNAi gene enrichment ranking. |19091943| | + | ^ RIGER |RNAi gene enrichment ranking. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=19091943|PMID:19091943]]| |
| - | ^ RSA |Redundant siRNA Activity analysis. |17828270| | + | ^ RSA |Redundant siRNA Activity analysis. |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=17828270|PMID:17828270]]| |
| - | ^ Encore |Easy NGS-to-Gene CRISPR REsults |29178829| | + | ^ Encore |Easy NGS-to-Gene CRISPR REsults |[[https://www.ncbi.nlm.nih.gov/pubmed/?term=29178829|PMID:29178829]]| |
| [[:orcs:curation_guide|Back to ORCS Curation Guide]] | [[:orcs:curation_guide|Back to ORCS Curation Guide]] | ||