BioGRID TAB 2.0 Formatted Downloads
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biogrid_tab_version_2.0 [2015/05/29 21:57] biogridadmin |
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| ==== Complex File Column Definitions ==== | ==== Complex File Column Definitions ==== | ||
| - | The column contents of BioGRID Interaction Tab 2.0 files should be as follows: | + | The column contents of BioGRID Interaction Complex Tab 2.0 files should be as follows: |
| - **BioGRID Complex ID**. A unique identifier for each complex within the BioGRID database. It can appear more than once in this file as each participant in the complex is given a separate row, so all rows with the same value in this column are participants in the same complex. | - **BioGRID Complex ID**. A unique identifier for each complex within the BioGRID database. It can appear more than once in this file as each participant in the complex is given a separate row, so all rows with the same value in this column are participants in the same complex. | ||
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| - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | - **Quantitative Score**. This will be a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be "-" if no score is reported. | ||
| - **Post Translational Modification**. For any Biochemical Activity experiments, this field will be filled with the associated post translational modification. Will be "-" if no modification is reported. | - **Post Translational Modification**. For any Biochemical Activity experiments, this field will be filled with the associated post translational modification. Will be "-" if no modification is reported. | ||
| - | - **Ontology Terms**. If any ontology term info is recorded, it will be provided here separated by "|". Each ontology term will be of the format {term class}term:type[qualifier^qualifier]. Note that the type and qualifiers are optional and will only be present where recorded. Ontology terms may also have multiple qualifiers in which case unique qualifiers will be separated by carat (^). If no ontology term information is available, this field will contain "-". | + | - **Ontology Class**. If ontology terms are mapped to this complex, the class of those terms will be listed here. If more than one term is mapped, each of their classes will be separated by a "|". |
| + | - **Ontology Terms**. If ontology terms are mapped to this complex, they will be listed here separated by "|". | ||
| + | - **Ontology Qualifiers**. If additional qualifying ontology terms are listed for the ontology terms in the previous column, they will be listed here separated by "|". If more than one for a single term is available, they will be separated by a carat (^). If no qualifiers are listed, this field will be "-" with multiple "-" separated by "|" (example: "-|-|qualifier|-") | ||
| + | - **Ontology Types**. If any ontology types are listed, they will be separated by "|" corresponding to the correct ontology term. No types will be represented by "-". | ||
| - **Qualifications**. If additional plain text information was recorded for an interaction, it will be listed with unique qualifiers separated by "|". If no qualification is available, this field will contain "-". | - **Qualifications**. If additional plain text information was recorded for an interaction, it will be listed with unique qualifiers separated by "|". If no qualification is available, this field will contain "-". | ||
| - **Tags**. If an interaction has been tagged with additional classifications, they will be provided in this column separated by "|". If no tag information is available, this field will contain "-". | - **Tags**. If an interaction has been tagged with additional classifications, they will be provided in this column separated by "|". If no tag information is available, this field will contain "-". | ||