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--- aboutus [2012/03/05 18:37]
biogridadmin [BioGRID Team]
+++ aboutus [2013/06/01 21:00] (current)
biogridadmin [About the BioGRID]
@@ Line 1: / Line 1: @@
 ====== About the BioGRID ======
-The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans (**[[http://thebiogrid.org|thebiogrid.org]]**). BioGRID currently holds over **[[statistics|460 000 interactions]]** curated from both high-throughput datasets and individual focused studies, as derived from over 30 000 publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.1 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as **[[http://www.ncbi.nlm.nih.gov/gene|Entrez-Gene]]**, **[[http://www.yeastgenome.org/|SGD]]**, **[[http://www.arabidopsis.org/|TAIR]]**, **[[http://flybase.org/|FlyBase]]** and other **[[http://wiki.thebiogrid.org/doku.php/partners|interaction meta-databases]]**. The entire BioGRID 3.1 data collection may be **[[http://thebiogrid.org/download.php|downloaded in multiple file formats]]**, including **[[http://www.imexconsortium.org|IMEx]]** compatible PSI MI XML. For developers, BioGRID interactions are also available via a **[[biogridrest|REST based Web Service]]** and **[[biogridplugin2|Cytoscape plugin]]**. All BioGRID documentation is available online in the **[[http://wiki.thebiogrid.org|BioGRID Wiki]]**.
+The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans (**[[http://thebiogrid.org|thebiogrid.org]]**). BioGRID currently holds over **[[statistics|680,000 interactions]]** curated from both high-throughput datasets and individual focused studies, as derived from over 40,000 publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.2 web interface contains new search and display features that enable rapid queries across multiple data types and sources. BioGRID provides interaction data to several model organism databases, resources such as **[[http://www.ncbi.nlm.nih.gov/gene|Entrez-Gene]]**, **[[http://www.yeastgenome.org/|SGD]]**, **[[http://www.arabidopsis.org/|TAIR]]**, **[[http://flybase.org/|FlyBase]]** and other **[[http://wiki.thebiogrid.org/doku.php/partners|interaction meta-databases]]**. The entire BioGRID 3.2 data collection may be **[[http://thebiogrid.org/download.php|downloaded in multiple file formats]]**, including **[[http://www.imexconsortium.org|IMEx]]** compatible PSI MI XML. For developers, BioGRID interactions are also available via a **[[biogridrest|REST based Web Service]]** and **[[biogridplugin2|Cytoscape plugin]]**. All BioGRID documentation is available online in the **[[http://wiki.thebiogrid.org|BioGRID Wiki]]**.
 ** Contact Information **
   * **EMAIL**: **[[biogridadmin@gmail.com]]**
   * **TWITTER**: **[[http://twitter.com/#!/biogrid|@biogrid]]**
 ===== BioGRID Team =====
   * **Lorrie Boucher** [curator, Toronto][[http://www.princeton.edu/main/|{{ :princeton_university.gif.png|}}]]
+  * **Ashton Breitkreutz** [curator, Toronto]
   * **Bobby-Joe Breitkreutz** [software engineer, Toronto]
   * **Christie Chang** [curator, San Diego]
   * **Andrew Chatr-Aryamontri** [curator, Montreal][[http://www.iric.ca/|{{ :universityofmontreal.jpg|}}]]
+  * **Daici Chen** [curator, Montreal]
   * **Kara Dolinski** [co-principal investigator, Princeton]
   * **Sven Heinicke** [software engineer, Princeton]
@@ Line 17: / Line 18: @@
   * **Michael Livstone** [curator, Princeton]
   * **Julie Nixon** [curator, Edinburgh]
+  * **Lara O’Donnell** [curator, Toronto]
   * **Rose Oughtred** [curator, Princeton]
+  * **Lindsay Ramage** [curator, Edinburgh]
   * **Teresa Reguly** [curator, Toronto][[http://www.lunenfeld.ca/|{{ :slri_logo.gif|}}]]
   * **Jennifer Rust** [curator, San Diego]
@@ Line 31: / Line 34: @@
 {{ :news.png|}}
+  * Chatr-Aryamontri A, Breitkreutz BJ, Heinicke S, Boucher L, Winter A, Stark C, Nixon J, Ramage L, Kolas N, O'Donnell L, Reguly T, Breitkreutz A, Sellam A, Chen D, Chang C, Rust JM, Livstone MS, Oughtred R, Dolinski K, Tyers M. **The BioGRID Interaction Database: 2013 update.** Nucleic Acids Res. 2012 Nov 30. [ [[http://www.ncbi.nlm.nih.gov/pubmed/23203989|Pubmed]] ]
   * Stark C, Breitkreutz BJ, Chatr-Aryamontri A, Boucher L, Oughtred R, Livstone MS, Nixon J, Van Auken K, Wang X, Shi X, Reguly T, Rust JM, Winter A, Dolinski K, Tyers M. **The BioGRID Interaction Database: 2011 update.** Nucleic Acids Res. 2010 Nov 11. [ [[http://www.ncbi.nlm.nih.gov/pubmed/21071413|Pubmed]] ]
   * Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M.  **A global protein kinase and phosphatase interaction network in yeast.** Science. 2010 May 21;328(5981):1043-6. [ [[http://www.ncbi.nlm.nih.gov/pubmed/20489023|Pubmed]] ]
@@ Line 40: / Line 44: @@
   * Breitkreutz BJ, Stark C, Tyers M. **The GRID: the General Repository for Interaction Datasets.** Genome Biol. 2003;4(3):R23. Epub 2003 Feb 27. [ [[http://www.ncbi.nlm.nih.gov/pubmed/12620108|Pubmed]] ]
   * Breitkreutz BJ, Stark C, Tyers M. **Osprey: a network visualization system.** Genome Biol. 2003;4(3):R23. Epub 2003 Feb 27. [ [[http://www.ncbi.nlm.nih.gov/pubmed/12620107|Pubmed]] ]
 ===== BioGRID Affiliations =====
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